RetrogeneDB ID: retro_mmur_403

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_284:387419..388388(-)
• Located in intron of: ENSMICG00000012742

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SERPINB6
• Ensembl ID: ENSMICG00000001981
• Aliases: None
• Description: serpin peptidase inhibitor, clade B (ovalbumin), member 6 [Source:HGNC Symbol;Acc:8950]

Sequence

>retro_mmur_403
GCACTTTGTTTAAACAAAAGCAGTGGCGGTGGAGGTGGAGATGTCCACCAGGGCTTCCAGTCGCTTCTCACCGAAGTGAA
TAAGACTGGCACTCAGTACTTGCTGAGAACGGCCAACAAGCTCTTTGGGGAAAAGTCTTGTGAGTTCCTCTCGTCTTCTA
AAGATTCCTGCCACAAATTCTACCAAGCAGAGATGCGAGAGCTCGACTTTATCAGTGTTACAGAGGAGTCTAGAAAACAC
ATAAACACCTGGGTGGCGGAAAAGACAGAAGGTAAAATTGCAGAGCTCCTGTCTCCAGATTCAGTGAATTCATTGACTAA
TCTGATTCTCGTGAATGCCATCTACTTCAAAGGAAACTGGGATAAACAATTTAACAAAGATTAGACCAAGGAGAGACCAT
TTAAAGTCAGCAAGAGTGAGAGGAAACCCGTGCAAATGATGTTTAAGAAATCTACTTTTAACATCACCTATATAGGAGAA
ATATTCACCCAAATTCTGGTGCTTCCCTACGTGGGCAAGGAGCTGAACATGATCATCATGCTTCCAGACGAGAACAGCAA
CTTGATGACGGTGGAAAAAGAAATCACTTATGAGAAGTTTGTAGAATGGACGAGGCCAGACATGGTGGATGAAGAAGAGG
TGGAAGTGTTCCTCCCCAGGTTTAAGCTGGAGGAGAATTACGACATGGAGAATGTCCTTCGCAGCCTGGGTATGACCGAT
GCCTTCGAGCAGGCCAGGGCAGACTTTTCCGGAATGTCGTCCAAGAGAGATCTGTTTCTGTCCAAGGTCGTGCACAAGTC
CTTCGTGGAGGTCAACGAGGAGGGCACAGAGGCTGCGGCTGCCACAGCCGCCATCATGATGATGCGGTGCACCAGAATCA
CCCCCAGGTTCTGTGCCGACCGCCCCTTCCTCTTCTTCATCCAGCACAGCGGGACCAACGGGATCCTGTTCTGTGGCCGG
TTCTCCTCC

Alignment

ORF - retro_mmur_403 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.98 %
• Parental protein coverage: 99.69 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ALCLNKSSGGGGGDVHQGFQSLLTEVNKTGTQYLLRTANKLFG-KSCEFLSSFKDSCHKFYQAEMGELDF
          ALCLNKSSGGGGGDVHQGFQSLLTEVNKTGTQYLLRTANKLFG.KSCEFLSS.KDSCHKFYQAEM.ELDF
Retrocopy ALCLNKSSGGGGGDVHQGFQSLLTEVNKTGTQYLLRTANKLFGEKSCEFLSSSKDSCHKFYQAEMRELDF

Parental  ISAAEESRKHINTWVAEKTEGKIAELLSPDSVNSLTNLILVNAIYFKGNWDKQFNKDQTKERPFKVSKVT
          IS..EESRKHINTWVAEKTEGKIAELLSPDSVNSLTNLILVNAIYFKGNWDKQFNKD.TKERPFKVSK..
Retrocopy ISVTEESRKHINTWVAEKTEGKIAELLSPDSVNSLTNLILVNAIYFKGNWDKQFNKD*TKERPFKVSKSE

Parental  RKPVQMMFKKSTFNITYIGEIFTQILVLPYVGKELNMIIMLPDENSDLMTVEKEITYEKFIEWTRPDMMD
          RKPVQMMFKKSTFNITYIGEIFTQILVLPYVGKELNMIIMLPDENS.LMTVEKEITYEKF.EWTRPDM.D
Retrocopy RKPVQMMFKKSTFNITYIGEIFTQILVLPYVGKELNMIIMLPDENSNLMTVEKEITYEKFVEWTRPDMVD

Parental  EEEVEVFLPRFKLEENYDMENVLRSLGMTDAFEQARADFSGMSSKRDLFLSKVVHKSFVEVNEEGTEAAA
          EEEVEVFLPRFKLEENYDMENVLRSLGMTDAFEQARADFSGMSSKRDLFLSKVVHKSFVEVNEEGTEAAA
Retrocopy EEEVEVFLPRFKLEENYDMENVLRSLGMTDAFEQARADFSGMSSKRDLFLSKVVHKSFVEVNEEGTEAAA

Parental  ATAAIMMMRCARITPRFCADRPFLFFIQHSGTHGILFCGRFSS
          ATAAIMMMRC.RITPRFCADRPFLFFIQHSGT.GILFCGRFSS
Retrocopy ATAAIMMMRCTRITPRFCADRPFLFFIQHSGTNGILFCGRFSS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_403 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_403 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000017483	1 retrocopy	retro_btau_827,
Microcebus murinus	ENSMICG00000001981	1 retrocopy	retro_mmur_403 ,
Myotis lucifugus	ENSMLUG00000008803	1 retrocopy	retro_mluc_1610,
Monodelphis domestica	ENSMODG00000005468	2 retrocopies	retro_mdom_510, retro_mdom_602,
Mustela putorius furo	ENSMPUG00000000448	1 retrocopy	retro_mputfur_1037,
Mus musculus	ENSMUSG00000060147	2 retrocopies	retro_mmus_3191, retro_mmus_3192,
Pteropus vampyrus	ENSPVAG00000010001	1 retrocopy	retro_pvam_1243,
Tursiops truncatus	ENSTTRG00000003879	2 retrocopies	retro_ttru_1224, retro_ttru_1837,