RetrogeneDB ID: retro_mmur_1575

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_8558:21192..24270(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MYH1
• Ensembl ID: ENSMICG00000011020
• Aliases: None
• Description: myosin, heavy chain 1, skeletal muscle, adult [Source:HGNC Symbol;Acc:7567]

Sequence

>retro_mmur_1575
ATGAGCGGCGACACTGAGATGGAAGTGTTCGGCATGGCTGCTCCTTTCCTCCGGAAGTCGGAGAAGGAGAGGATCGAGGC
CCAGAACCAGCCCTTTGACGCCAAAACCTACTGCTTTGTGGTAGACTCAAAGGAAGAATATGCCAAGGGGAAAATCAAGA
GTTCTCAGGACAGGAGGGTCACCGTGGAAACCAAGGACAACAGGACCCTGGTGGTCAAACCCGAGGACGTGTACACCATG
AACCCCCCCAAGTTTGACAGGATCGAGGACATGGCCATGCTGACGCACCTCAACGAGCCGGCCGTGCTGTACAACCTCAA
GGACCGCTACACGTCCTGGATGATCTACACCTACTCCGGCCTCTTCTGTGTCACCATCAACCCCTACAAGTGGCTGCCGG
TGTACAACCCCGAGGTGGTGAATGGCTACTGGGGCAAGAAGCGCCAGGAGGCCCCGCCCCACATCTTCTCCATCTCCGAC
AACGCCTATCAGTTCATGCTGACCGATCGTGAAAACCAGTCTATTCTGATCACCGGAGAATCCGGGGCAGGAAAGACTGT
GAACACCAAACGGGTCATCCAGTACTTTGCAACAATTGCAGCTACTGGAGACCTCACCAAGAAGAAGGACTCCAAAATGA
AGGGGACTCTGGAAGACCAGATCATCAGTGCCAACCCGTTGCTGGAGGTCTTCGGGGACGCCAAGACCGTGAGGAACGAC
AATTCCTCCCGCTTTGGCAAGTTCATCCGAATCCACTTTGGAACGACTGGGAAGCTGGCCTCTGCAGATATTGAAACGTA
TCTGCTGGAAAAGTCAAGAGTCACCTTCCAGCTGAAGGCTGAGAGAAGCTATCACATCTTCTACCAGATTCTTTCAAACA
AGAAGCCTGAGCTCATAGAGTTGCTGCTTATTACGACCAACCCTTACGACTACCCGTTCATCAGCCAGGGTGAAATCCTG
GTGGCCAGCATAGACGATGCTGAGGAGCTGCTGGCTACAGATAGTGCCATTGACATCCTGGGCTTCAGCCCAGAGGAGAA
ATCTGGGCTCTACAAGCTGACGGGAGCCGTGATGCACTACAGGAACATGAAGTTCAAGCAGAAGCAGCGGGAGGAGCAGC
CAGAGCCAGACGGCACCAAAGTGCTGACAAAACAGCCTATCTGATGGGCCTCAACTCTTCGGACCTCCTGAAAGCCTTGT
GCTTCCCCAGAGTGAAAGTCGGGAACGAGTACGTCACCAAAGCCAAACCGTGATCAGGTTCACCACGCTGTGATTCCTGT
CCAAGTCGGTGTACGAAAAGCTGTTCCTCTGGATGGTGGCGCGCATTAACCAGCAGCTGGACACGAAGCTACCAAGACAC
CACTTCATCGGCGTCTTGGACATTGCAGGCTTTGAAATCTTTGAGTATAACAGCCTGGAGCAGCTGTGCATCAACTTCAC
CAACGAGAAACTGCAACAGTTTTTCAACCACCACATGTTCGTGCTGGAGCAGGAGGAGTACAAGAAGGAAGGCATCGAGT
GGACGTTCATCGACTTCGGGATGGACCTGGCGGCCTGCATGGAGCTCATCGAGAAGCCGATGGGCATCTTCTCCATCCTG
GAAGAGGAGTGCATGTTCCCCAAGGCAACGGACACCTCCTTCAAGAACAAGCTGTATGACCAGCACCTGGGCAAGTCCAG
CAACTTCCAGAAGCCCAAGGTGGTCAAAGGCAGGGCTGAGGCCCACTTCTCCCTGGTCCACTAAGCAGGCACCGTGGACT
ACAGTGTCTCGGGCTGGCTGGAGAAGAACAAGGACCCCCTAACGAGACTGTCGTTGGGCTGTACCAGAAGTCCTCCAACA
GGCTCCTGGCACACCTCTATGCCACCTTTGCCACGGCAGACGCTGATAGCGGGAAGAAGAAAGTTGCCAAGAAAAAGGGT
TCTTCCTTCCAAACTGTCTCTGCCATTTTCAGGGAAAATCTGAACAAGCTGATGTCCAATTTGAGAACGACTCACCCTCA
TTTTGTGCGTTGGATAATTCCCAACGAAACCAAAACCCCAGGGGCCATGGAACACAGCCTGGTCCTGCACCAGCTGCGCT
GCAACGGTGTCCTGGAGGGCATCCGCATCTGCCGGAAGGGCTTCCCCAACAGGATCCTCTACGGGGACTTCAAACAAAGA
TACCGAGTGCTGAACGCCAGTGCAATCCCTGAGGGGCAATTCATCGACAGCAAGAAGGCCTGCGAAAAGCTCCTGGCATC
CATCGACATTGACCACACGCAGTACAAATTTGGACACACCAAGGTGTTCTTCAAGGCTGGCTTGCCGGGAACCCTGGAAG
ATATGGGGGACGACCACCTGGCCAGACTGATCGCCCGCACGCAAGCCGTGTGCAGGGGCTTTCTCATGTGCGTGGAGTTC
CAGAAGATGGTGCAGAGGAGGGAGGCCATCTTCTGCATCCAGTACAACATCCGCTCATTCATGAACGTCAAGCACTGGCC
CTGGATGAAACTCTTCTTCAAGATCAAGCCTCTCCTCAAGAGTGCGGAGACAGAGAAGGAGATGGCCACCATGAAGGAGG
AGTTCCAGAAAACCAAAGACGAACTCACCAAGTCAGAGGCAAAAAGGAAGGAGCTGGAGGAAAAGTTGGTGACTCTGGTA
CAAGAGAAGAATGACCTGCAGCTCCAAGTACAAGCTGAAAGTGAAAACTTGTTGGACGCCGAGGAAAGATGCGACCAGCT
GATCAAAGCCAAATTCCAGCTCGAGGCCAAGATCAAGGAGGTGACTGAGCGAGCTGAGGACGAGGAAGAGATCAATGCTG
AGCTGACGGCCAAGAAGAGGAAACTGGAGGATGAATGTTCAGAACTCAAGAAAGACATTGATGACCTTGAGCTGACACTG
GCCAAGGTGGAGAAGGAGAAGCATGCCACAGAGAACAAGGTTAAAAACCTGACTGAGGAACTCGCTGGGTTAGATGAAAC
CATTGCCAAGTTAACCACAGAGAAGAAGGCCCTCCAAGAGGCCCACCAGCAGGCCCTGGATGACCTCCAAGCTGAAGAAG
ACAAAGTCAATTCTTTGAGCAAAATCAAGAGCAAACTG

Alignment

ORF - retro_mmur_1575 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.17 %
• Parental protein coverage: 53.04 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  MSSDAEMAVFGEAAPYLRKSEKERIEAQNKPFDAKTSVFVADPKESFVKATVQSREGGKVTAKTEGGTTV
          MS.D.EM.VFG.AAP.LRKSEKERIEAQN.PFDAKT..FV.D.KE...K....S.....VT..T....T.
Retrocopy MSGDTEMEVFGMAAPFLRKSEKERIEAQNQPFDAKTYCFVVDSKEEYAKGKIKSSQDRRVTVETKDNRTL

Parental  TVKDDQVFPMNPPKYDKIEDMAMMTHLHEPAVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNAEVV
          .VK...V..MNPPK.D.IEDMAM.THL.EPAVLYNLK.RY..WMIYTYSGLFCVT.NPYKWLPVYN.EVV
Retrocopy VVKPEDVYTMNPPKFDRIEDMAMLTHLNEPAVLYNLKDRYTSWMIYTYSGLFCVTINPYKWLPVYNPEVV

Parental  TAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTKRVIQYFATIAVTGEKKKEES
          ..Y.GKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTKRVIQYFATIA.TG...K...
Retrocopy NGYWGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTKRVIQYFATIAATGDLTKKKD

Parental  GKMQGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIHFGTTGKLASADIETYLLEKSRVTFQLKA
          .KM.GTLEDQIISANPLLE.FG.AKTVRNDNSSRFGKFIRIHFGTTGKLASADIETYLLEKSRVTFQLKA
Retrocopy SKMKGTLEDQIISANPLLEVFGDAKTVRNDNSSRFGKFIRIHFGTTGKLASADIETYLLEKSRVTFQLKA

Parental  ERSYHIFYQIMSNKKPDLIEMLLITTNPYDYAFVSQGEITVPSIDDQEELMATDSAIDILGFTSDERVSI
          ERSYHIFYQI.SNKKP.LIE.LLITTNPYDY.F.SQGEI.V.SIDD.EEL.ATDSAIDILGF...E....
Retrocopy ERSYHIFYQILSNKKPELIELLLITTNPYDYPFISQGEILVASIDDAEELLATDSAIDILGFSPEEKSGL

Parental  YKLTGAVMHYGNMKFKQKQREEQAEPDGTEV-ADKAAYLQSLNSADLLKALCY-PRGKDGNYVTGQTVQQ
          YKLTGAVMHY.NMKFKQKQREEQ.EPDGT.V.ADK.AYL..LNS.DLLKALC..P.......V..Q....
Retrocopy YKLTGAVMHYRNMKFKQKQREEQPEPDGTKV<ADKTAYLMGLNSSDLLKALCF<PQSESRERVRHQSQTV

Parental  V-YNSVGALAKAVYEKMFLWMVTRINQQLDTKQPRQYFIGVLDIAGFEIFDF-SLEQLCINFTNEKLQQF
          ........L.K.VYEK.FLWMV.RINQQLDTK.PR..FIGVLDIAGFEIF...SLEQLCINFTNEKLQQF
Retrocopy IRFTTL*FLSKSVYEKLFLWMVARINQQLDTKLPRHHFIGVLDIAGFEIFEYNSLEQLCINFTNEKLQQF

Parental  FNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPMGIFSILEEECMFPKATDTSFKNKLYEQHLG
          FNHHMFVLEQEEYKKEGIEW.FIDFGMDLAAC.ELIEKPMGIFSILEEECMFPKATDTSFKNKLY.QHLG
Retrocopy FNHHMFVLEQEEYKKEGIEWTFIDFGMDLAACMELIEKPMGIFSILEEECMFPKATDTSFKNKLYDQHLG

Parental  KSNNFQKPKPTKGKAEAHFSLVHYAGTVDYNINGWLDKNKDPL-NETVVGLYQKSSMKTLAYL---FSGA
          KS.NFQKPK..KG.AEAHFSLVH.AGTVDY...GWL.KNKDPL.NETVVGLYQKSS...LA.L...F..A
Retrocopy KSSNFQKPKVVKGRAEAHFSLVH*AGTVDYSVSGWLEKNKDPL<NETVVGLYQKSSNRLLAHLYATFATA

Parental  AAEAGGKKGGKKKGSSFQTVSALFRENLNKLMTNLRSTHPHFVRCIIPNETKTPGAMEHELVLHQLRCNG
          .A..G.KK..KKKGSSFQTVSA.FRENLNKLM.NLR.THPHFVR.IIPNETKTPGAMEH.LVLHQLRCNG
Retrocopy DADSGKKKVAKKKGSSFQTVSAIFRENLNKLMSNLRTTHPHFVRWIIPNETKTPGAMEHSLVLHQLRCNG

Parental  VLEGIRICRKGFPSRIIYADFKQRYKVLNASAIPEGQFIDSKKASEKLLGSIDIDHTQYKFGHTKVFFKA
          VLEGIRICRKGFP.RI.Y.DFKQRY.VLNASAIPEGQFIDSKKA.EKLL.SIDIDHTQYKFGHTKVFFKA
Retrocopy VLEGIRICRKGFPNRILYGDFKQRYRVLNASAIPEGQFIDSKKACEKLLASIDIDHTQYKFGHTKVFFKA

Parental  GLLGLLEEMRDEKLAQLITRTQARCRGFLARVEYQKMVERRESIFCIQYNIRAFMNVKHWPWMKLYFKIK
          GL.G.LE.M.D..LA.LI.RTQA.CRGFL..VE.QKMV.RRE.IFCIQYNIR.FMNVKHWPWMKL.FKIK
Retrocopy GLPGTLEDMGDDHLARLIARTQAVCRGFLMCVEFQKMVQRREAIFCIQYNIRSFMNVKHWPWMKLFFKIK

Parental  PLLKSAETEKEMANMKEEFEKAKENLAKAEAKRKELEEKLVALMQEKNDLQLQVQSEADSLADAEERCDQ
          PLLKSAETEKEMA.MKEEF.K.K..L.K.EAKRKELEEKLV.L.QEKNDLQLQVQ.E...L.DAEERCDQ
Retrocopy PLLKSAETEKEMATMKEEFQKTKDELTKSEAKRKELEEKLVTLVQEKNDLQLQVQAESENLLDAEERCDQ

Parental  LIKTKIQLEAKIKEATERAEDEEEINAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKN
          LIK.K.QLEAKIKE.TERAEDEEEINAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKN
Retrocopy LIKAKFQLEAKIKEVTERAEDEEEINAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKN

Parental  LTEEMAGLDETIAKLTKEKKALQEAHQQTLDDLQAEEDKVNTLTKAKIKL
          LTEE.AGLDETIAKLT.EKKALQEAHQQ.LDDLQAEEDKVN.L.K.K.KL
Retrocopy LTEELAGLDETIAKLTTEKKALQEAHQQALDDLQAEEDKVNSLSKIKSKL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1575 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1575 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000011020	1 retrocopy	retro_mmur_1575 ,