RetrogeneDB ID: retro_mmur_1552

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_8163:37252..37836(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: KLF17
• Ensembl ID: ENSMICG00000007300
• Aliases: None
• Description: Kruppel-like factor 17 [Source:HGNC Symbol;Acc:18830]

Sequence

>retro_mmur_1552
TCGACACCTGAGATGTTATTGGCCCCAACCATACCTTCCACCGAGGCCCACGTTATGCTTCCCTCTCTGGCTCAGATGTT
GCCCCCTAAAGAGCCCCTTGACCTTGGGATGTCCCCAGATGAGTCCCAATCATTGCTGGCATTAGAATCACAGGACTCTT
TGTGAGTCAGCCCGCCTTTCAGGCAGGCGTCTTCCTGCCTGAACAGCCCAGCTCTGCTCCACAGGGAGCAGACCCGAACT
CCAGGGCCCAGGAAGGGCCACATGGAGGGAAACCCTTAGTTTTCAGGCCTTATGTCTGCCAGCATGAGAATTGTGGAAAA
GCTTACACCAAGCACTCCCACCAGTGCAAACACACAGGTGAGAGGCTCTACAAATGCACTTGGCAAGACTGTACATGGTC
TTTCTTCTGTTCCGATGAACTTGGACGACATATACGGATACACACCAGATATCGACCACATAAATGTAGCCAATGTGGGC
GACGCTTCATGAGATCTGACCATCTCAAGCAACACCAAAGGACTCATCAGCATATGCCAGGACCCTGAGACCCACAAGCC
AATGATGGAGAGATGGGTGGTCCT

Alignment

ORF - retro_mmur_1552 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84. %
• Parental protein coverage: 53.8 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  SSNEMLLAPTIPSTEAHVMLPSLAXXXXPREPLDLEMSPAESQSLLALESQDS-FVSQPAFQAGVFLPEH
          S..EMLLAPTIPSTEAHVMLPSLA....P.EPLDL.MSP.ESQSLLALESQDS.FVSQPAFQAGVFLPE.
Retrocopy STPEMLLAPTIPSTEAHVMLPSLAQMLPPKEPLDLGMSPDESQSLLALESQDS<FVSQPAFQAGVFLPEQ

Parental  PIPAPQGADPNSRAQEGARGRKPLVLRPYVCQHENCGKAYTKRSHLVNHERKHTGERPYKCTWEDCTWSF
          P..APQGADPNSRAQEG..G.KPLV.RPYVCQHENCGKAYTK.S....H..KHTGER.YKCTW.DCTWSF
Retrocopy PSSAPQGADPNSRAQEGPHGGKPLVFRPYVCQHENCGKAYTKHS----HQCKHTGERLYKCTWQDCTWSF

Parental  FRSDELGRHIRIHTRYRPYKCRQCGRLFMRSDHLKQHQRTHQQMPGP-DPQANDGEMGGP
          F.SDELGRHIRIHTRYRP.KC.QCGR.FMRSDHLKQHQRTHQ.MPGP.DPQANDGEMGGP
Retrocopy FCSDELGRHIRIHTRYRPHKCSQCGRRFMRSDHLKQHQRTHQHMPGP*DPQANDGEMGGP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1552 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1552 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000007300	1 retrocopy	retro_mmur_1552 ,
Sus scrofa	ENSSSCG00000024191	2 retrocopies	retro_sscr_489, retro_sscr_490,