RetrogeneDB ID: retro_mmur_1540

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_8029:49586..50124(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: C21orf33
• Ensembl ID: ENSMICG00000001007
• Aliases: None
• Description: chromosome 21 open reading frame 33 [Source:HGNC Symbol;Acc:1273]

Sequence

>retro_mmur_1540
GTGATCTACCACACCAAGGGCAGCCTTCTGAGAGCGAGACTAGGAACGTTCTGACCTAGTCGGCGAGGATACCCAGGGCA
AGATCGCAGACCTGGGCACTCTCAGTGCAGGCAACCATGATGCCGCCATCTTTCCCGGAGGCTTTGGAGCTGCCAAAAAC
CTGAGCACGTTTGCTGTGGACCGGAAAGATTGCCGAGTTAACAGAGACGTCGAGCGTGTCTTGAAGGAGTTCCACGCAGC
CGGGAAGCCCATCGACTTGTGCTGCATCGCACCTGTCCTCGCGGCCAAAGTGCTCAGAGGCGTGGGGGTCACCGTGGGCC
ACGAGCAGAAGGAGGTCAGCAAGTGGCCCTATGCCGGGACCGCTGAGGCCATCAAGGCCTTGGGCGCCAATTACTGTGTT
AAGGGAGTGGCCGAAGCTCACGTGGAGCTGAAGAACAAGGTGTTCACGGCCCCGGTCTTCATGTGCGAGACCGCCCTCCA
CCACATCCACGATGGCATCAGGGCCATGGTGAAGAAGGTGCTGGAACTCACTGGAAAG

Alignment

ORF - retro_mmur_1540 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.07 %
• Parental protein coverage: 66.79 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  VIDHTKG-QPSESETRNVLTESARIAR-GKIADLATLSAANHDAAIFPGGFGAAKNLSTFAVDGKDCRVN
          VI.HTKG.QPSESETRNVLT.SARI.R.GKIADL.TLSA.NHDAAIFPGGFGAAKNLSTFAVD.KDCRVN
Retrocopy VIYHTKG<QPSESETRNVLT*SARIPR<GKIADLGTLSAGNHDAAIFPGGFGAAKNLSTFAVDRKDCRVN

Parental  RDVERVLKEFHAARKPVGCC--APVLAAKVLRGVEVTV-HEQEEGGKWPYAGTAEAIKALGAKHCVKGVV
          RDVERVLKEFHAA.KP...C..APVLAAKVLRGV.VTV.HEQ.E..KWPYAGTAEAIKALGA..CVKGV.
Retrocopy RDVERVLKEFHAAGKPIDLCCIAPVLAAKVLRGVGVTVGHEQKEVSKWPYAGTAEAIKALGANYCVKGVA

Parental  RPHVDLKNKVVTTPAFMCETALHHIYDGIRAMVKKVLELTGK
          ..HV.LKNKV.T.P.FMCETALHHI.DGIRAMVKKVLELTGK
Retrocopy EAHVELKNKVFTAPVFMCETALHHIHDGIRAMVKKVLELTGK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1540 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1540 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000001007	1 retrocopy	retro_mmur_1540 ,
Monodelphis domestica	ENSMODG00000021082	1 retrocopy	retro_mdom_1385,