RetrogeneDB ID:

retro_mmur_1470

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:scaffold_657:478542..479829(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RUNX1T1
Ensembl ID:ENSMICG00000015825
Aliases:None
Description:runt-related transcription factor 1; translocated to, 1 (cyclin D-related) [Source:HGNC Symbol;Acc:1535]


Retrocopy-Parental alignment summary:






>retro_mmur_1470
CCGAGGTCAGTGTCCTTTACCCCTACATTAAGCAATGGAATCAGCCATTCTCCTCCTACCCCGAATGTGCCCCATCACCA
CCACAGAGATTCAGCAATGGTCCTGCCTCTTCCACACCATCTGCACTAACAAACCAGCAGTTGCCAGCCACCTGTGGGTG
CTCGGCAGCTCAGCAAGTCGAAACGCTTTCTCACTACTCTGCAACAGCTTGGCAATGACATCTCACCTGAGATTGGGGAG
AAGGTGCGGACTCTTGTTCTGGCATTGGTGAACTCAACGGTGACAATTGAAGAATTCCATTGCAAGCTACAAGAGGCCAC
AAACTTTCTTCTTCGTCCTTTTGTGATTCCGTTTCTCAAGGCTAACCTGCCCCTGCTGCAGCGAGAACCGCTACACTGTG
CTCGGGCAGCCGAGCAGCCCCCGTCCCAGTACCTGGCTCAGCACCAACACCTTCTGCTCAACACAAGCATCGCGTCACCT
GCTGGCTCTTCCGAGCTGCTCATGGAGGTACATGGAAAGGGGAAGAGGCCCAGTCCAGAGAGGAGAGAAGAGAATAGTTT
TGAAAGAGATGCGATTGCTCCTGAGCCACCTGAGAAGAGAGTGTGTACCATTAGCCCTGTGCCCCGGCGTAGTCCTGCTC
TCACGGTACCTCTCATGAATCCTGGGGGCCAGTTCCATCCTACGCCTCCGCCTCTTCAGCATTACACCTTAGAAGATATT
GCAACTTCACACCTGTATCAGGAACCCAACAAGGTGCTAGAACATTGAGGAGTTCGTGATAGGCACCATAATCTTAGTCT
AAATGGAAGCTATCAAGATGAGTTGGTAGACCACCGTTTGACAGAAAGAGAATGGGCTGATGAATGGAAACACCTTGACC
ATGTCCTGAATTGCATTATGGAAATGGTAGAGAAAACACGGCGCTCCATGGCAGTTCTGCGGCGCTGTCAGGAATCTGAT
CATGAAGAGCTCAACTACTGGAAAGGACGATATAATGACAACACAGACATGAGGAAAACAGGGACCGAGTTGGTCTGCAG
GCAGCACAGCCCTGGGACTACAGATTCTCTCAGCCATGATTCTCAGAGGGAATTCAGCAGTAGGCCAGGTACAGGATACG
TACCTGTGGAATTTTGGAAAAAAACAGAAGCTGTGAATAAGGTGAAGATTCAGGCCATGTCAGAAGTACAGAAGGCCGTT
GCTGAAGCAGAGCAGAAAGCCTTTGAAGTTACTGCAACAGAGAGAGCTCGAATGGAGCAAACCATCGCGGACATCAAGTG
GCAGGCG

ORF - retro_mmur_1470 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 62.07 %
Parental protein coverage: 71.52 %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalPRTSSFTPTTLTNGTSHSPTALNG-APSPPNGFSNGPSSSSSSSLANQQLPPACG-ARQLSKLKRFLTTL
PR..SFTPT.L.NG.SHSP...N..APSPP..FSNGP.SS..S.L.NQQLP..CG.ARQLSK.KRFLTTL
RetrocopyPRSVSFTPT-LSNGISHSPPTPNV<APSPPQRFSNGPASSTPSALTNQQLPATCG>ARQLSKSKRFLTTL
ParentalQQFGNDISPEIGERVRTLVLGLVNSTLTIEEFHSKLQEATNFPLRPFVIPFLKANLPLLQRELLHCARLA
QQ.GNDISPEIGE.VRTLVL.LVNST.TIEEFH.KLQEATNF.LRPFVIPFLKANLPLLQRE.LHCAR.A
RetrocopyQQLGNDISPEIGEKVRTLVLALVNSTVTIEEFHCKLQEATNFLLRPFVIPFLKANLPLLQREPLHCARAA
ParentalKQNPAQYLAQHEQLLLDASTTSPVDSSELLLDVNENGKRRTPDRTKENGFDREPLHSEHPSKRPCTISPG
.Q.P.QYLAQH..LLL..S..SP..SSELL..V...GKR..P.R..EN.F.R.....E.P.KR.CTISP.
RetrocopyEQPPSQYLAQHQHLLLNTSIASPAGSSELLMEVHGKGKRPSPERREENSFERDAIAPEPPEKRVCTISPV
ParentalQRYSPNNGLSYQPNGLPHPTPPPP-QHYRLDDMAIAHHYRDSYRHPSHRDLRDRNRPMGLHGTRQEEMID
.R.SP.........G......PPP.QHY.L.D.A..H.Y........H...RDR.....L.G..Q.E..D
RetrocopyPRRSPALTVPLMNPGGQFHPTPPPLQHYTLEDIATSHLYQEPNKVLEH*GVRDRHHNLSLNGSYQDELVD
ParentalHRLTDREWAEEWKHLDHLLNCIMDMVEKTRRSLTVLRRCQEADREELNYWIRRYSDAEDLKKGGSSSSSH
HRLT.REWA.EWKHLDH.LNCIM.MVEKTRRS..VLRRCQE.D.EELNYW..RY.D..D..K.G......
RetrocopyHRLTEREWADEWKHLDHVLNCIMEMVEKTRRSMAVLRRCQESDHEELNYWKGRYNDNTDMRKTGTELV--
ParentalSRQQSPVNPDPVALDAHREFLHRPASGYVPEEIWKKAEEAVNEVKRQAMTELQKAVSEAERKAHDMITTE
.RQ.SP...D....D..REF..RP..GYVP.E.WKK..EAVN.VK.QAM.E.QKAV.EAE.KA.....TE
RetrocopyCRQHSPGTTDSLSHDSQREFSSRPGTGYVPVEFWKKT-EAVNKVKIQAMSEVQKAVAEAEQKAFEVTATE
ParentalRAKMERTVAEAKRQA
RA.ME.T.A..K.QA
RetrocopyRARMEQTIADIKWQA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Microcebus murinus was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_mmur_1470 retrocopy.

TSS - click to see more details

Microcebus murinus was not studied using FANTOM5 data.

Lab - click to see more details

retro_mmur_1470 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Microcebus murinus ENSMICG00000015825 1 retrocopy
retro_mmur_1470 ,




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