RetrogeneDB ID:

retro_mmur_1402

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:scaffold_5457:103225..103625(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:OCIAD2
Ensembl ID:ENSMICG00000006147
Aliases:None
Description:OCIA domain containing 2 [Source:HGNC Symbol;Acc:28685]


Retrocopy-Parental alignment summary:






>retro_mmur_1402
AACCTGTTGTCTTGTCCAAAATCAAATCTGCACATCATCCACAGAGGAGAGGTTTCAAAGATTATGCAAGAATGTCAAGA
AGAAAGTTTCTGGAAGAGAGGTTTGCCTTACTCTCTTGAAAGCCTGCTTGTCACCCAGGACTAGTCCACCAAGGTTATTT
AGCAGCTAATCCAAGATGTGGATCATTGCCTAAAGTTGCACTTGCTGGTATCTTGGGATTTGGCCTTGGAAAAGGTATCA
TACAAAAGCTGTATGCCAGAGTAAATTCCATTTCTTTGGAGATCAGCTCCATGGAGCTGGTTTGGGTCCAGAGCATAATA
GGTGCTGCCTGCTTACCTGTGAGGAATGCAAAATGAAGCATGGATTAAGTGAGAAAGGAGATTGACAGCCTTTAGCTTCC

ORF - retro_mmur_1402 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 77.94 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalSLLFCPKSKLHI-HREEVAKIMRECQEESFWKRALPFSLVSMLVTQ-GLVHQGYLAANPRFGSLPKVALA
.LL.CPKS.LHI.HR.EV.KIM.ECQEESFWKR.LP.SL.S.LVTQ.GLVHQGYLAANPR.GSLPKVALA
RetrocopyNLLSCPKSNLHIIHRGEVSKIMQECQEESFWKRGLPYSLESLLVTQ<GLVHQGYLAANPRCGSLPKVALA
ParentalGILGFGLGK-VSYIG-VCQSKFHCFEDQLRGAGFGPQHNRHCLLTCEDCKIKRGLSEKPGSQPSAS
GILGFGLGK.VSY...VCQSKFH.F.DQL.GAG.GP.HNR.CLLTCE.CK.K.GLSEK...QP.AS
RetrocopyGILGFGLGK>VSYKS>VCQSKFHFFGDQLHGAGLGPEHNRCCLLTCEECKMKHGLSEKGD*QPLAS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Microcebus murinus was not studied using RNA-Seq expression data.