RetrogeneDB ID: retro_mmur_1280

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_38762:673..1018(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MOB4
• Ensembl ID: ENSMICG00000008599
• Aliases: None
• Description: MOB family member 4, phocein [Source:HGNC Symbol;Acc:17261]

Sequence

>retro_mmur_1280
GCAGCTCATAAAACTCCAAAAGAGTGTCCTGCTATAGACTATACAAGACACACACTTGATGGTGCTGCATGTCTTCTGAA
TAGCAATAAATATTTTCCCAGCAGGGTTAGCATAAAGGAATCATCTGTAGCAAAACTAGGATCAGTATGCCGTAGGATTT
ACAGAATATTTTCACATGCTTATTTTCATCACCGGCAGATATTTGATGAATATGAAAATGAAACATTTTTGTGTCATCGG
TTTACTTAGTTTGTGATGAAATATAATTTGATGTCCAAGGATAACCTGATTGTACCAATTTTAGAAGAGGAAGTTCAGAA
TTCAGTTTCTGGGGAAAGTGAAGCA

Alignment

ORF - retro_mmur_1280 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.52 %
• Parental protein coverage: 51.57 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  AAHKLQKKCPAIDYTRHTLDGAACLLNSNKYFPSRVSIKESSVAKLGSVCRRIYRIFSHAYFHHRQIFDE
          AAHK..K.CPAIDYTRHTLDGAACLLNSNKYFPSRVSIKESSVAKLGSVCRRIYRIFSHAYFHHRQIFDE
Retrocopy AAHKTPKECPAIDYTRHTLDGAACLLNSNKYFPSRVSIKESSVAKLGSVCRRIYRIFSHAYFHHRQIFDE

Parental  YENETFLCHRFTKFVMKYNLMSKDNLIVPILEEEVQNSVSGESEA
          YENETFLCHRFT.FVMKYNLMSKDNLIVPILEEEVQNSVSGESEA
Retrocopy YENETFLCHRFT*FVMKYNLMSKDNLIVPILEEEVQNSVSGESEA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1280 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1280 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Latimeria chalumnae	ENSLACG00000015430	1 retrocopy	retro_lcha_112,
Microcebus murinus	ENSMICG00000008599	1 retrocopy	retro_mmur_1280 ,
Oryctolagus cuniculus	ENSOCUG00000005712	1 retrocopy	retro_ocun_30,