RetrogeneDB ID: retro_mmur_1079

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_2058:284822..286442(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: IKBKB
• Ensembl ID: ENSMICG00000006581
• Aliases: None
• Description: inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta [Source:HGNC Symbol;Acc:5960]

Sequence

>retro_mmur_1079
ATACTTTCTTTACTAAGTGACATAGGGTCTGGGATTCGATACTTGCATGCAAACAAAATTATACATCGAGATCTAAAACC
TGAAAATATAGTTCTTCAGGATGTTGGTGGAAAGATAACGCATAAAATAATTGATCTAGGTTATGCCAAAGATGTTGATC
AAGGAAGCCTGTGTACATCTTTTGTGGGGACACTGCAGTATCTGGCCCCAGAGCTCTTTGAGAATAAGCCTTACACAGCC
ACTGTTGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCGGGATACAGGCCTTTTTTGCATCATCTGCAGCC
ATTTACCTGCCATGAGAAGATTAAGAAGAAGGATCCAAAGTGTATATTTGCATGTGAAGAGATGACAGGAGAAGTTCGGT
TTAGTACCCATTTACCTCAGCCAAATAGCCTTTGTAGTTTAATGGTAGAACCCATGGAAAACTGGCTACAATTGATGTTG
AATTGGGACCCTCAGCAGAGAGGAGGACCTGTTGATCTTACTTTGAAGCAGCCAAGATGTTTTGTATTAATGGATCACAT
TCTGAATTTGAAGATAGTACATATCCTAAATATGACTTCTGCAAAGATAATTTCTTTTTTGTTACCACCTGATGAAAGTC
TTCATTCACTGCAGTCTCGTATTGAGCGTGAAACTGGGATAAGTACTGTTTCTCAAGAGCTGCTTTCAGAAACAGGCATT
TCTCTGGATCCTCGGAAACCAGCTTCCCAGTGTGTTCTAGATGGAGTTAGAGGCTGTGATAGCTATATGGTTTATTTGTT
TGATAAAAGTAAGACTGTATATGAAGGGCCATTTGCTTCCAGAAGTTTATCTGATTGTGTAAATTATATTGTACAGGACA
GCAAAATACAGCTTCCAATTATACAGCTGCGTAAAGTATGGGCTGAAGCAGTGCACTATGTGTCTGGGCTAAAAGAAGAC
TACAGCAGGCTCTTTCAGGGACAAAGAGCAGCAATGTTAAGTCTTCTTAGATATAATGCTAACTTGACAAAAATGAAGAA
CACTTTGATCTCAGCATCACAGCAACTGAAAGCTAAATTGCAGTTTTTTCACAAAAGCATTCAGCTTGACTTGGAGAGAT
ATAGTGAGCAGATGACTTACGGGATATCTTCAGAAAAAATGCTAAAAGCATGGAAAGAAATGGAAGAAAAGGCCATCCAC
TATGCTGAGGTTGGTGTCATTGGATACCTGGAGGATCAGATTATGTCCTTGCACACTGAAATCATGGAGCTACAGAAGAG
CCCCTATGGAAGACGTCAGGGAGATTTGATGGAATCTCTGGAACAGCGTGCCATTGATCTATATAAACAGTTAAAGCACA
GACCTTCAGATCACTCCTACAGTGACAGCACAGAGATGGTGAAGATCATTGTGCATACTGTACAGAGTCAGGATCGTGTT
CTCAAGGAGCTGTTTGGTCATCTGAGCAAGTTGTTGGGCTGTAAGCAGAAGATTATTGATCTACTCCCCAAGGTGGAAGT
GGCCCTCAGTAACATCAAAGAAGCTGACAATACTGTCATGTTTATGCAGGGAAAGAGGCAGAAAGAAATATGGCATCTCC
TTAAAATTGCTTGTACACAG

Alignment

ORF - retro_mmur_1079 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 51.19 %
• Parental protein coverage: 77.13 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ILTLLSDIASALRYLHENRIIHRDLKPENIVLQQGEQRLIHKIIDLGYAKELDQGSLCTSFVGTLQYLAP
          IL.LLSDI.S..RYLH.N.IIHRDLKPENIVLQ.......HKIIDLGYAK..DQGSLCTSFVGTLQYLAP
Retrocopy ILSLLSDIGSGIRYLHANKIIHRDLKPENIVLQDVGGKITHKIIDLGYAKDVDQGSLCTSFVGTLQYLAP

Parental  ELLEQQKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHSKVRQKSEMDIVVSEDLNGAVKFSSSLPY
          EL.E...YT.TVDYWSFGT..FECI.G.RPFL...QP...H.K...K....I...E...G.V.FS..LP.
Retrocopy ELFENKPYTATVDYWSFGTMVFECIAGYRPFLHHLQPFTCHEKIKKKDPKCIFACEEMTGEVRFSTHLPQ

Parental  PNNLNSVLAQRLKKWLQLMLMWHPRQRG--TDPTYGPNGCFKALDDILNLKLVHILNMVTGTIHTYPVTE
          PN.L.S........WLQLML.W.P.QRG...D.T.....CF...D.ILNLK.VHILNM....I.......
Retrocopy PNSLCSLMVEPMENWLQLMLNWDPQQRGGPVDLTLKQPRCFVLMDHILNLKIVHILNMTSAKIISFLLPP

Parental  DESLQSLKARIQQDTGIPEKDQELLQEAGLALIPEKPATQCISDSKLNEGRTLDMDLVFLFDNSKVNYET
          DESL.SL..RI...TGI....QELL.E.G..L.P.KPA.QC.....L...R..D...V.LFD.SK..YE.
Retrocopy DESLHSLQSRIERETGISTVSQELLSETGISLDPRKPASQCV----LDGVRGCDSYMVYLFDKSKTVYEG

Parental  QISPRPQPESVSCILQEPKRNLSFFQLRKVWGQVWHSIQTLKEDCNRLQQGQRAAMMNLLRNNSCLSKMK
          ....R.....V..I.Q..K..L...QLRKVW....H....LKED..RL.QGQRAAM..LLR.N..L.KMK
Retrocopy PFASRSLSDCVNYIVQDSKIQLPIIQLRKVWAEAVHYVSGLKEDYSRLFQGQRAAMLSLLRYNANLTKMK

Parental  NSMASMSQQLKAKLDFFKTSIQIDLEKYSEQTEFGITSDKLLLAWREMEQAVELCGRENEVKHLVERMMA
          N...S.SQQLKAKL.FF..SIQ.DLE.YSEQ...GI.S.K.L.AW.EME..............L....M.
Retrocopy NTLISASQQLKAKLQFFHKSIQLDLERYSEQMTYGISSEKMLKAWKEMEEKAIHYAEVGVIGYLEDQIMS

Parental  LQTDIVDLQRSPMGRKPGGTLDDLEEQARELYRRLREKPRDQRTDGDSQEMVRLLLQAIQGFEKKVRVIY
          L.T.I..LQ.SP.GR..G.....LE..A..LY..L...P.D.....DS.EMV.......Q..........
Retrocopy LHTEIMELQKSPYGRRQGDLMESLEQRAIDLYKQLKHRPSD-HSYSDSTEMVKIIVHTVQSQDRVLKELF

Parental  TQLSKTVVCKQKALELLPKVEEVVELMNEDEKTVVRLQEKRQKELWNLLKIACSK
          ..LSK...CKQK...LLPKVE.......E...TV...Q.KRQKE.W.LLKIAC..
Retrocopy GHLSKLLGCKQKIIDLLPKVEVALSNIKEADNTVMFMQGKRQKEIWHLLKIACTQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1079 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1079 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000006581	1 retrocopy	retro_mmur_1079 ,