RetrogeneDB ID: retro_mmul_775

Retrocopy location

• Organism: Rhesus macaque (Macaca mulatta)
• Coordinates: 1099553000011:8729..9036(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GAGE10
• Ensembl ID: ENSMMUG00000002333
• Aliases: None
• Description: None

Sequence

>retro_mmul_775
AGGAAGATCAATCAGCCTAGACCAACACAATTTGTACAACCTGAGGTGACCTGGCCTATTCTGCCCAAGCAGTTCAGTTA
TGAACCACCTGAAGTGGAACCACCAACTCAAAGACAGGATCCTTCACCTGCTCAGGAGAGAAAGGATGAGGGAGCATCTG
CAGCTCAAAGGCCTGAGCTGGAAGCCGATGGGCCAGGAACTGGTTCAGATGAAGACTGGGTATGAGCGTGGAGATGGTCC
TGATGTGAAGGGGATGTGCCTGCCAAACTCAGAGCCTGGGAAACTGCCAGAAAGTGAAAAGCAATCA

Alignment

ORF - retro_mmul_775 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 64.42 %
• Parental protein coverage: 92.73 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  RSTYRRRPRRYVEPPEMIGPMLEKGLE-TPEKLEPPTQSQDPAPAQERKDKGASAAQGPELQADS-QELV
          R.....RP...V.P.E...P.L.K.....P...EPPTQ.QDP.PAQERKD.GASAAQ.PEL.AD..QELV
Retrocopy RKINQPRPTQFVQP-EVTWPILPKQFSYEPPEVEPPTQRQDPSPAQERKDEGASAAQRPELEADG>QELV

Parental  QLKTGCERGDGPDVKGMCLSNPEPGKLPEEGRQS
          Q.KTG.ERGDGPDVKGMCL.N.EPGKLPE...QS
Retrocopy QMKTGYERGDGPDVKGMCLPNSEPGKLPESEKQS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain	0.00 RPM	0.11 RPM
SRP007412_brain_prefrontal_cortex	0.00 RPM	0.16 RPM
SRP007412_cerebellum	0.00 RPM	0.00 RPM
SRP007412_heart	0.00 RPM	0.00 RPM
SRP007412_kidney	0.00 RPM	0.12 RPM
SRP007412_liver	0.00 RPM	0.00 RPM
SRP007412_testis	0.11 RPM	6.52 RPM

ChIP-Seq

Macaca mulatta was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmul_775 retrocopy.

TSS

Macaca mulatta was not studied using FANTOM5 data.

Lab

retro_mmul_775 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_mmul_775 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Macaca mulatta	ENSMMUG00000002333	2 retrocopies	retro_mmul_758, retro_mmul_775 ,