RetrogeneDB ID:

retro_mmul_65

Retrocopy
location
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:6:58519230..58521030(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMMUG00000010445
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:DLAT
Ensembl ID:ENSMMUG00000017568
Aliases:None
Description:dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [Source:RefSeq peptide;Acc:NP_001244504]


Retrocopy-Parental alignment summary:






>retro_mmul_65
ACTACAGGATATGGCGGAGTCCGGGTACTGTGTGGCTGGACCCCCAGCTCTGGGGCCACACCACGGAACCGCTTACTGCT
GCAGCTTTTGGGGTCACCCGGCCGCCGCTGTTACAGTCTTCCCCCGCATCAGAAGGTTCCATTGCCTTCTCTTTCCCCCA
CAATGCAGTCAGGCACCATAGCCCATTGGGAAAAAAAAGAGGGGGGCAAAATCAACGAAGGTGACCTAATTGCAGAAGTT
GAAACTGATAAAGCCACTGTTGGATTTGAGAGCCTGGAGGAGTGTTATATGGCAAAGATACTTGTTGCTGAAGGTACCAG
GGATGTTCCCATTGGAGCGATCATCTGTATCACAGTTGGCAAGCCTGAGGATATTGAGGCTTTTAAAAATTATACATTGG
ATTCCTCAGCAGCACCTACCCCACAGGCGGCCCCAGCACCAACCCCTGCTGCCACTGCTTCACCACCTACACCTTCTGCT
CAGGCTCCTGGTAGCTCATATCCCCCTCACATGCAGGTACTTCTTCCTGCCCTCTCTCCCACCATGACCATGGGCACAGT
TCAGAGATGGGAAAAAAAAGTGGGTGAGAAGCTAAGTGAAGGAGACTTACTGGCAGAGATAGAGACTGACAAAGCCACTA
TAGGTTTTGAAGTACAGGAAGAAGGTTATCTGGCAAAAATCCTGGTCCCTGAAGGCACAAGAGATGTCCCTCTAGGAACC
CCACTCTGTATCATTGTAGAAAAAGAGGCAGATATATCAGCATTTGCTGACTATAGGCCAACTGAAGTAACAGATTTAAA
ACCACAAGCACCACCACCTACCCCACCCCCGGTGGCCACTGTTCCTCTAACTCCCCAGCCTTTAGCTCCTACACCTTCAG
CACCCTGCCCAGCTACTCCTGCTGGACCAAAGGGAAGGGTGTTTGTTAGCCCTCTTGCCAAGAAGTTGGCAGTAGAGAAA
GGGATTGATCTTACACAAGTAAAAGGTACAGGACCAGATGGTAGAGTCACCAAGAAGGATATTGACTCTTTTGTGCCTAG
TAAAGCTGCTCCTGCTCCAGCAGCTGTTGTGCCTCCCACAGGTCCTGGAATGGCACCAGTTCCTACAGATGTCTTCACAG
ATATCCCAATTAGCAACGTTCATCAGGTTATTGCACAACGATTAATGCAATCAAAGCAAACCATACCTCATTATTACCTT
TCTATAGATGTAAATATGGGAGAAGTTTTGTTGGTACAGAAAGAACTTAATAAGATTTTAGAAGGGAGAAGCAAAATTTC
TGTCAATGACTTCATCATAAAAGCTTCAGCTTTGGCATGTCTAAAAGTTCCCGAAGCAAATTCTTCTTGGATGGACACAG
TTATGAGACAAAATCACATTGTTGATATCAGTGTTGCAGTCAGTACTCCTATAGGACTCATCACACCTATTGTGTTTAAT
GCACATATAAAAGGGCTAGAAACCATTACTAATGATGTTGTTTCTTTAGCAACCAAAGCAAGAGAGGGTAAACTACAGCC
ACACGAATTCCAGGGTGGCACTTTTACGATCTCCAATTTAGGACTGTTTGGAATTAAGAATTTCTCTGCTATTATTAACC
TACTTCAAGCATGTATTTTGGCAATTGGTGCTTCAGAGGATAAACTGGTTCCCACAGATAATGAAAAAGGGTTTGATGTG
GCTAGCATGATGTCTGTTACACTCAGTTGTGATCACCAGGTGGTGGATGGAGCAGTTAGAGACCAGTGGCTTGCTGAGTT
TAGAAAGTACCTTGAAAAACCTATCACCATGTTGTTGTAA

ORF - retro_mmul_65 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 95.49 %
Parental protein coverage: 92.58 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalTTGYGGVRALCGWTPSSGATPRNRLLLQLLGSPGRRCYSLPPHQKVPLPSLSPTMQAGTIARWEKKEGDK
TTGYGGVR.LCGWTPSSGATPRNRLLLQLLGSPGRRCYSLPPHQKVPLPSLSPTMQ.GTIA.WEKKEG.K
RetrocopyTTGYGGVRVLCGWTPSSGATPRNRLLLQLLGSPGRRCYSLPPHQKVPLPSLSPTMQSGTIAHWEKKEGGK
ParentalINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITVGKPEDIEAFKNYTLDSSPAPT
INEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITVGKPEDIEAFKNYTLDSS.APT
RetrocopyINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITVGKPEDIEAFKNYTLDSSAAPT
ParentalPQAAPAPTPAATASPPIPSAQAPGSSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETD
PQAAPAPTPAATASPP.PSAQAPGSSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETD
RetrocopyPQAAPAPTPAATASPPTPSAQAPGSSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETD
ParentalKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKEADISAFADYRPTEVTDLKPQAPPPTPPPVAT
KATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKEADISAFADYRPTEVTDLKPQAPPPTPPPVAT
RetrocopyKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKEADISAFADYRPTEVTDLKPQAPPPTPPPVAT
ParentalVPPTPQPLAPTPSAPCPATPAGPKGRVFVSPLAKKLAVEKGIDLTQVKGTGPDGRITKKDIDSFVPSKAA
VP.TPQPLAPTPSAPCPATPAGPKGRVFVSPLAKKLAVEKGIDLTQVKGTGPDGR.TKKDIDSFVPSKAA
RetrocopyVPLTPQPLAPTPSAPCPATPAGPKGRVFVSPLAKKLAVEKGIDLTQVKGTGPDGRVTKKDIDSFVPSKAA
ParentalPAPAAVVPPTGPGMAPVPTGVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKIL
PAPAAVVPPTGPGMAPVPT.VFTDIPISN...VIAQRLMQSKQTIPHYYLSIDVNMGEVLLV.KELNKIL
RetrocopyPAPAAVVPPTGPGMAPVPTDVFTDIPISNVHQVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVQKELNKIL
ParentalEGRSKISVNDFIIKASALACLKVPEANSSWMDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGLETIA
EGRSKISVNDFIIKASALACLKVPEANSSWMDTV.RQNH.VD.SVAVSTP.GLITPIVFNAHIKGLETI.
RetrocopyEGRSKISVNDFIIKASALACLKVPEANSSWMDTVMRQNHIVDISVAVSTPIGLITPIVFNAHIKGLETIT
ParentalNDVVSLAAKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLVPADNEKGFDV
NDVVSLA.KAREGKLQPHEFQGGTFTISNLG.FGIKNFSAIIN..QACILAIGASEDKLVP.DNEKGFDV
RetrocopyNDVVSLATKAREGKLQPHEFQGGTFTISNLGLFGIKNFSAIINLLQACILAIGASEDKLVPTDNEKGFDV
ParentalASMMSVTLSCDHRVVDGAVGAQWLAEFRKYLEKPVTMLL
ASMMSVTLSCDH.VVDGAV..QWLAEFRKYLEKP.TMLL
RetrocopyASMMSVTLSCDHQVVDGAVRDQWLAEFRKYLEKPITMLL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain 0 .11 RPM 37 .31 RPM
SRP007412_brain_prefrontal_cortex 0 .16 RPM 36 .73 RPM
SRP007412_cerebellum 0 .32 RPM 33 .77 RPM
SRP007412_heart 0 .35 RPM 69 .07 RPM
SRP007412_kidney 0 .00 RPM 47 .18 RPM
SRP007412_liver 0 .04 RPM 8 .99 RPM
SRP007412_testis 0 .08 RPM 32 .57 RPM

ChIP-Seq - click to see more details

Macaca mulatta was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_mmul_65 retrocopy.

TSS - click to see more details

Macaca mulatta was not studied using FANTOM5 data.

Lab - click to see more details

retro_mmul_65 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_mmul_65 has 0 orthologous retrocopies within eutheria group .

Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species Parental gene accession Retrocopies number
Macaca mulatta ENSMMUG00000017568 1 retrocopy
retro_mmul_65 ,
Otolemur garnettii ENSOGAG000000085591 retrocopy
retro_ogar_1946,




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