RetrogeneDB ID: retro_mluc_983

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429786:6701393..6702788(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MCM5
• Ensembl ID: ENSMLUG00000001987
• Aliases: None
• Description: None

Sequence

>retro_mluc_983
AACAGGGTCACTATCATGGGCATCTACTCCATTAAGAAGTTTGGCCTTACCGTCAGCAAGGGCTGAGACAGGTGGGCGTG
GGCATCCGGAGCTCCTACATCCATGTCTTGGGCATCCAGGTAGACACAGATGGCTCTGGCCGCAGCTTTGTTGGGGCCGT
GACCCCGCAGGAAGAGGAGGAGTTCCGGCGGCTGGCTGCCCTCCCCAATGTCTACGAGGTCATCTCCAAGAGCATCGCCC
CCTCCATCTTCGGGGGCATGGACATGAAGAAGGCCATCGCCTGCCTGCTCTTTGGGGGTTCCCGGAAAGGGCTCCCTGAT
GGACTCACTCGCCGAGGAGACATCAACCTGCTGATGCTGGGAGACCCGGGGACGTCCAAGTCCCAACTGCTGAAGTTTGT
GGAGAAGTGCTCTCCCATTGGGGTGTATACACCTGGGAAAGGCAGCAACGCGGCAGGCCTGACAGCCTCGGTGATGAGGG
ACCCCTTGTCCCGGAACTTCATCATGGAGGGCAGAGCCATGGTCCTGGCTGATGGCGGGGTTGTCTGTATGGATGAGTCT
GACCAGACGCGAGAAGACGACTGCGTGGCAATCCACGAGGCCATGGAGCAGCAGACCATCTCTATCGCCAAGGCTGGGAT
CACCACCACCCTCAATTCCCGCTGCTCCGTCCTGGCTGCTGCCAACTTGGTGTTTGGCCCCTGGGATGAGACGAAGGGGG
AGGACAACATCGATTTCATGCCTACCATCTTGTCCCACTTCGACATGATCTTCATCGTCAAAGACGAGTACAATAAGGAA
AGGGACTTGATGCTGGCCAAACACGTTATCACTCTGCACCTGAGTGCGCAGACACAGACCCAGGCGGTAGAGGGGGAGGT
GGACCTGATCAAGCTGAAGAAGTTCATCTCCTACTGCCGAGCAAAGTGTGGCCCCCAGCTGTCAGCGGAGGCCGTGGAGA
AGCTGAAGAACTGGTATATCCTCATGCGCAGCGGGGCCCGTCAACACTAGAGGGACTGCAAGCGCTGCTCTAGCATCCCC
ATCACTGTGCGGCAGCTGGAGGCCATTGTGCGCATCGCCGAGGCCCTCAGCAAGATGAGGCTGCAGCCCTTCGCCACGGA
GGCGGACCTGGAGGAGGCCCTGAGGCTCTTCCAGGTGTCCAGGCTGGACGCGCCTTGTCGGGCACCCTGTCAGGGGTGGA
GGGCTTCACCAGCCAGGAGGACCAAGAGATACTGAGCCGCATCGAGAAGCAGCTCAAGCGCCGCTTTGCCATCGGCTCCC
AGGTGTCGGAGCACAGCATCATCCAGGACTTCACCAAGCAGAAATACCCAGAGCACGCCATCCACAAGGTCCTGCAGCTC
ATGCTGAACGCCGGGGGGTCCAGCACCGCATGCAG

Alignment

ORF - retro_mluc_983 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.62 %
• Parental protein coverage: 63.57 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  NRVTIMGIYSIKKFGLTSSKGRDR-VGVGIRSSYIRVLGIQVDTEGSGRSFAGAVTPQEEEEFRRLAALP
          NRVTIMGIYSIKKFGLT.SKG.DR.VGVGIRSSYI.VLGIQVDT.GSGRSF.GAVTPQEEEEFRRLAALP
Retrocopy NRVTIMGIYSIKKFGLTVSKG*DR<VGVGIRSSYIHVLGIQVDTDGSGRSFVGAVTPQEEEEFRRLAALP

Parental  NVYEVISKSIAPSIFGGTDMKKAIACLLFGGSRKRLPDGLTRRGDINLLMLGDPGTAKSQLLKFVEKCSP
          NVYEVISKSIAPSIFGG.DMKKAIACLLFGGSRK.LPDGLTRRGDINLLMLGDPGT.KSQLLKFVEKCSP
Retrocopy NVYEVISKSIAPSIFGGMDMKKAIACLLFGGSRKGLPDGLTRRGDINLLMLGDPGTSKSQLLKFVEKCSP

Parental  IGVYTSGKGSSAAGLTASVMRDPSSRNFIMEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISI
          IGVYT.GKGS.AAGLTASVMRDP.SRNFIMEG.AMVLADGGVVC.DE.D..REDD.VAIHEAMEQQTISI
Retrocopy IGVYTPGKGSNAAGLTASVMRDPLSRNFIMEGRAMVLADGGVVCMDESDQTREDDCVAIHEAMEQQTISI

Parental  AKAGITTTLNSRCSVLAAANSVFGRWDETKGEDNIDFMPTILSRFDMIFIVKDEHNEERDMMLAKHVITL
          AKAGITTTLNSRCSVLAAAN.VFG.WDETKGEDNIDFMPTILS.FDMIFIVKDE.N.ERD.MLAKHVITL
Retrocopy AKAGITTTLNSRCSVLAAANLVFGPWDETKGEDNIDFMPTILSHFDMIFIVKDEYNKERDLMLAKHVITL

Parental  HVSALTQTQAVEGEVDLTKLKKFIAYCRAKCGPRLSAEAAEKLKNRYILMRSGARQHERDSERRSSIPIT
          H.SA.TQTQAVEGEVDL.KLKKFI.YCRAKCGP.LSAEA.EKLKN.YILMRSGARQH.RD..R.SSIPIT
Retrocopy HLSAQTQTQAVEGEVDLIKLKKFISYCRAKCGPQLSAEAVEKLKNWYILMRSGARQH*RDCKRCSSIPIT

Parental  VRQLEAIVRIAEALSKMRLQPFATEADVEEALRLFQVSTLDA-ALSGTLSGVEGFTSQEDQEMLSRIEKQ
          VRQLEAIVRIAEALSKMRLQPFATEAD.EEALRLFQVS.LDA.ALSGTLSGVEGFTSQEDQE.LSRIEKQ
Retrocopy VRQLEAIVRIAEALSKMRLQPFATEADLEEALRLFQVSRLDA<ALSGTLSGVEGFTSQEDQEILSRIEKQ

Parental  LKRRFAIGSQVSEHSIIQDFTKQKYPEHAIHKVLQLMLRRG-EIQHRMQ
          LKRRFAIGSQVSEHSIIQDFTKQKYPEHAIHKVLQLML..G...QHRMQ
Retrocopy LKRRFAIGSQVSEHSIIQDFTKQKYPEHAIHKVLQLMLNAG<GVQHRMQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_983 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000000511	1 retrocopy	retro_cjac_285,
Myotis lucifugus	ENSMLUG00000001987	1 retrocopy	retro_mluc_983 ,