RetrogeneDB ID: retro_mluc_968

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429786:6811900..6812430(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000026783
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: AGPAT2
• Ensembl ID: ENSMLUG00000007348
• Aliases: None
• Description: None

Sequence

>retro_mluc_968
ATGAGCATCATCAGCTGGTTCGTCCGGTCCTTCAAGTACCTGTACGGCCTCCGCTTCGACGTGAAGGGTCGCCAGCGGCT
GTGGGTGGACCGGCCCTGCGTCATCGTGTCCAACCACCAGAGCATCCTGGACATGATGGGCCTCATGGAGATCCTGCCCC
CGCACTGCGTGCAGATCGCCAAGCGGGAGCTGCTGTTCACGGCCCGGTGGGCTTGATCATGTACCTGGGGGGCGTCTTCT
TCATCAACCGGCAGCGCTCCAGCACCGCCATGAGCGTGATGGCCGACGTGGGCGAGCTCATGAACCGCGAGAACCTCAAA
GTGTGGATTTACCCCGAGGGCACGCGGAACGACAACGGGGACCTGCTGCCCTTTAAGAAAGGCGCCTTCTACCTGGCGGT
CCAGGCACAGGTGCCCATCGTGCCCGTGGTGTACTCCAGCTTCTCCTCCTTCTACAACCCCAGGACGAAGCTCTTCACCT
CAGGCACCATCAAGGTGGAGGTCCTGGACGCCATCCCCACCAGCGGGCTC

Alignment

ORF - retro_mluc_968 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.01 %
• Parental protein coverage: 94.15 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LSIISWFVRSFKYLYGLRFDVKGRQRLWVDRPCVIVSNHQSILDMMGLMEILPPRCVQIAKRELLFT-GP
          .SIISWFVRSFKYLYGLRFDVKGRQRLWVDRPCVIVSNHQSILDMMGLMEILPP.CVQIAKRELLFT.GP
Retrocopy MSIISWFVRSFKYLYGLRFDVKGRQRLWVDRPCVIVSNHQSILDMMGLMEILPPHCVQIAKRELLFT<GP

Parental  VGLIMYLGGVFFINRQRSSTAMSVMADVGELMTRENLKVWIYPEGTRNDNGDLLPFKKGAFYLAVQAQVP
          VGLIMYLGGVFFINRQRSSTAMSVMADVGELM.RENLKVWIYPEGTRNDNGDLLPFKKGAFYLAVQAQVP
Retrocopy VGLIMYLGGVFFINRQRSSTAMSVMADVGELMNRENLKVWIYPEGTRNDNGDLLPFKKGAFYLAVQAQVP

Parental  IVPVVYSSFSSFYNPRTKLFTSGSARAPRRGQFPLPGL
          IVPVVYSSFSSFYNPRTKLFTSG..........P..GL
Retrocopy IVPVVYSSFSSFYNPRTKLFTSGTIKVEVLDAIPTSGL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_968 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000007348	2 retrocopies	retro_mluc_1291, retro_mluc_968 ,
Ochotona princeps	ENSOPRG00000003291	1 retrocopy	retro_opri_578,
Ictidomys tridecemlineatus	ENSSTOG00000023422	1 retrocopy	retro_itri_5,