RetrogeneDB ID: retro_mluc_965

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429786:5052133..5053774(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FAM151A
• Ensembl ID: ENSMLUG00000014446
• Aliases: None
• Description: None

Sequence

>retro_mluc_965
GGCTGTAAGCAGGATGCAGTTTGTCGCCCAGATGCAGACATGCTGGACTACCTGCTGAGCCTGGGCCAGATCAGCCAGCG
GGATGGCCTGTTGGTCACCTGACACTATGCTGCCAACAGCCAGAAGGACATGAGGACTGCCCTGGAAAGCGACGTCATGG
TCCTGGAGGTGGATGTCAACCTAGAAGAGCTCAACACAGCCAACGAGACAGGGGTTCCCATCATGGCGCACCCCCCACTC
ATCTATAGTGACAACACCCTGGAGCAGTGGCTGGATGCTGTGCTGGCCTCTTCCCAGAAGGGTATCAAGCTAGACTTTAA
GAGTATCAAGGCTGTGGGCCCCTCCCTGGACCTCCTGCGGAGACTGACAGATGCTGGGAAAGTCCGGAGGCCTGTATGGA
TCAATGCCGACATCCTGAAGGGCCCCAGCGTGCCCATCTCCATCGAAGTCAATGCCACACAGTTCCTGGCCTTGGTTCAG
GAGAAGTATCCTGAGGCCACCCTGTCTCCAGGCTGGACCACCCTCTACGTGCTCCTGTTGCCGAACAGCACATACACCCG
AGCCATGATAGAGAAGATGCAGGAGCTGGTGGGAGCGCTGCCGCAGAGGGTCACCTTCCCCGTGCGGGCTGTCATGGCGC
GGGCTGCCTGGCCCCATTTCAGCTGGCTGCTGGGCCAGTCGGACAGGTACAGCCTGACACTGTGGCAGGGCGTCTCGGAC
CCCGTGTCGGTGGATGATCTTCTCTACATCCGGGACAACTCTGCCAACCACCAAATCTACTATGACCTCTTCGAGCCTGT
CCTGTCGCAGTTCAAGCAGCTTGCAATGAACGCCACATGGAAGCAAAGTTACTATACAGGAGGCAGCCTGATCCCCCTTC
TCCAGCTCCCCGGGGGCGACGCTCTGAGCGTGGAGTGGCAGCTTCCAGGTATCCAGGGCAATGCAACAGCAGCAACAGTT
CAACTCTCAGGAAAAGAAGGCATGATCCTGCTGAACGTCGGCCTCCAGGAGCCTGGCGCTGGAGATGCCATGCCCATCGT
GTATGCCTCGGGTGACTCTGCCCTGGCGCTGGAGTCGTGCCTGCTGCAGCTCACCACACACCCTGGACGCTGGGGAGTCC
ATTTGCTCATAGCAGAGCCCACAGCCCTTCTGCCAGCCCTGGCCGTGCTGGCCCACCTCTCCAACCTCAGTTGCTTCTCT
CTGCCTGTGTGGGTGGGGGCCACAGTCTCCCATGGGAGCTTTGCAGTGCCTGGCTACGTGCCCGGCAAGGAGCTGCTCAC
CGCTGTGGCTGAGGTTTTCCCCCACGTGACAGTGGCCCTGGGCTGGCCTGAGGAGGTACTGGGCAATGGCTACAAGGAGC
AGCTGCTCCCGGATGTGCTGGAGCTGAGCAAGGGCCTCTGGCAGTGTGTGTCCTTCCAGCTCCAGTCTGGGCCGCTGGGC
CAGAGCACGGCCGGGGTGGTGGCCAGGTTACTGGCAGCCTCCCCCAGGGCCACCATCACAGTGCAGCACAGCCCTTGGGC
GGGCAACTATACATCTGTGTGGAAAGGGCTGCTGGCGGCCAGGGCCGTGGACAAGACCCGGGTCTACTACATGCTGCTCA
AGGGTTATCACGAAGACCTGCTTGCAGATGTTGGCAGAAAC

Alignment

ORF - retro_mluc_965 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.56 %
• Parental protein coverage: 93.5 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GCKEDAVCRPDADMLDYLLSLGQISQRDGLLVTWYHAANSQKDMRAALEMCVLILTEEAGPRWQSQGDGL
          GCK.DAVCRPDADMLDYLLSLGQISQRDGLLVT...AANSQKDMR.ALE..V..L...............
Retrocopy GCKQDAVCRPDADMLDYLLSLGQISQRDGLLVT*HYAANSQKDMRTALESDVMVLEVDVNLEELNTANET

Parental  GLQCTPHPFLVHFANTLEQWLDAVWGPSSLGIKLDFKSIKAVGPSLDLLRRLTDAGKVRRPVWINADILK
          G.....HP.L....NTLEQWLDAV...S..GIKLDFKSIKAVGPSLDLLRRLTDAGKVRRPVWINADILK
Retrocopy GVPIMAHPPLIYSDNTLEQWLDAVLASSQKGIKLDFKSIKAVGPSLDLLRRLTDAGKVRRPVWINADILK

Parental  GPNVPISIQVNATQFLALVQEKYPEATLSPGWTTLYLPLFPKSTYTRAMIEKMQELVGALPQRVTFPVRA
          GP.VPISI.VNATQFLALVQEKYPEATLSPGWTTLY..L.P.STYTRAMIEKMQELVGALPQRVTFPVRA
Retrocopy GPSVPISIEVNATQFLALVQEKYPEATLSPGWTTLYVLLLPNSTYTRAMIEKMQELVGALPQRVTFPVRA

Parental  VMVRAAWPHFSWLLGQSDRYSLTLWQGVSDPVSVDDLLYIRDNCANHQIYYDLFEPVLSQFKQLAMNATR
          VM.RAAWPHFSWLLGQSDRYSLTLWQGVSDPVSVDDLLYIRDN.ANHQIYYDLFEPVLSQFKQLAMNAT.
Retrocopy VMARAAWPHFSWLLGQSDRYSLTLWQGVSDPVSVDDLLYIRDNSANHQIYYDLFEPVLSQFKQLAMNATW

Parental  KRSYYSGGSLIPLLQLPGGDALSVEWQVPDIRGNATAATVQLSGKEGMILLNVSLQEPGAGDAVPVVYAS
          K.SYY.GGSLIPLLQLPGGDALSVEWQ.P.I.GNATAATVQLSGKEGMILLNV.LQEPGAGDA.P.VYAS
Retrocopy KQSYYTGGSLIPLLQLPGGDALSVEWQLPGIQGNATAATVQLSGKEGMILLNVGLQEPGAGDAMPIVYAS

Parental  GDSALALESCLLQLATHPGRWGVHLLIAEPSALRPALAMLAHLSNLSLLSLPVWVEATVSHGSFAVPGYV
          GDSALALESCLLQL.THPGRWGVHLLIAEP.AL.PALA.LAHLSNLS..SLPVWV.ATVSHGSFAVPGYV
Retrocopy GDSALALESCLLQLTTHPGRWGVHLLIAEPTALLPALAVLAHLSNLSCFSLPVWVGATVSHGSFAVPGYV

Parental  PGKELLTAVAEVFPHVTVALGWPEEVLDSGYEEQLLTDMLELSKGLWQPVSFQLQSGPLGRSKAGVVARL
          PGKELLTAVAEVFPHVTVALGWPEEVL..GY.EQLL.D.LELSKGLWQ.VSFQLQSGPLG.S.AGVVARL
Retrocopy PGKELLTAVAEVFPHVTVALGWPEEVLGNGYKEQLLPDVLELSKGLWQCVSFQLQSGPLGQSTAGVVARL

Parental  LAASPRATVTVQHSPWAGNYTSVREGLLAARAVDKTRVYYVLPQSYLEDLLADVGRN
          LAASPRAT.TVQHSPWAGNYTSV..GLLAARAVDKTRVYY.L...Y.EDLLADVGRN
Retrocopy LAASPRATITVQHSPWAGNYTSVWKGLLAARAVDKTRVYYMLLKGYHEDLLADVGRN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_965 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000019801	1 retrocopy	retro_btau_325,
Homo sapiens	ENSG00000162391	1 retrocopy	retro_hsap_2742,
Myotis lucifugus	ENSMLUG00000014446	1 retrocopy	retro_mluc_965 ,
Macaca mulatta	ENSMMUG00000013680	1 retrocopy	retro_mmul_1489,
Pongo abelii	ENSPPYG00000001314	1 retrocopy	retro_pabe_2276,