RetrogeneDB ID: retro_mluc_96

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429874:3677815..3678418(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000027644
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000004674
• Aliases: None
• Description: None

Sequence

>retro_mluc_96
ATGGCCCAGCAGAGAGCCCTCCCGCAGAGCAAGGAGACGCTGCTGCAGTCCTACAACAAGCGGCTCAAGGACGACGTCAA
GTCAATGATGGACAACTTCACCGAGATCATCAAGACCGCCAAGATTGAGGATGAGACCCAGGTGTCCAGGGCCACCCAAG
GCGAGCAGGACAATTACGAGATGCACGTGCGAGCCTCCAAAATCGTCCGAGCCGGTGAGTCCCTGATGAAGCTGGTCTCC
GACCTCAAGCAGTTCCTGATCCTGAACGACTTCCTGTCGGTGAACGAGGCCATCGACCAGCGCAACCAGCAGCTCCGGGC
GCTGCAGGAGGAGTGCGACCGCAAGCTCACCGCCCTGTGGGAAGAGGCCTCCATGGACCTCTATGAGCTGGAGGAGGCTT
ACTACTCGTCCAGCTCCAGTCTCCGCGAAGCTAACGATCTGCCTCTGTGCAAAGCGTACTGGAGGCTGGACCTCGACACA
GACGCTGCCGATGGCCTCGCGGCCCCCCTGCGAGCCTCCCCAGAGCCCAGCGCTGGCCCCCTGCAGCCCGCCGCCCCTGC
CCACTCCCACACTAGCGGGCCTGGCCCCACAGAGCATGCCTGA

Alignment

ORF - retro_mluc_96 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.16 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAQQRALPQSKETLLQSYNKRLKDDIKSMMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRASNIVR
          MAQQRALPQSKETLLQSYNKRLKDD.KSMMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAS.IVR
Retrocopy MAQQRALPQSKETLLQSYNKRLKDDVKSMMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRASKIVR

Parental  AGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEECDRKLTALRDEVSIDLYELEEEYYSSRWR
          AGESLMKLVSDLKQFLILNDF.SVNEAIDQRNQQLRALQEECDRKLTAL..E.S.DLYELEE.YYSS...
Retrocopy AGESLMKLVSDLKQFLILNDFLSVNEAIDQRNQQLRALQEECDRKLTALWEEASMDLYELEEAYYSS---

Parental  KSSSLREANDLPLCEAYWRLDLDTDAADGLAAPLQASPEPSAGPLPPAAPAHSHASGPGPTEHA
          .SSSLREANDLPLC.AYWRLDLDTDAADGLAAPL.ASPEPSAGPL.PAAPAHSH.SGPGPTEHA
Retrocopy -SSSLREANDLPLCKAYWRLDLDTDAADGLAAPLRASPEPSAGPLQPAAPAHSHTSGPGPTEHA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_96 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000004674	1 retrocopy	retro_mluc_96 ,
Monodelphis domestica	ENSMODG00000012748	1 retrocopy	retro_mdom_1314,