RetrogeneDB ID: retro_mluc_888

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429781:1239299..1240061(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MAPK8
• Ensembl ID: ENSMLUG00000014533
• Aliases: None
• Description: None

Sequence

>retro_mluc_888
ATGAGTAGAAGTAAGTGTGACAGCAATTTTTGTAGTGTAGAAATTGGAGATTCTACATTCACAGTCCTGAAATGAGATCA
GAATTTAAAACCTATAGGCTCAGGAGCTCAAGGATAGTATGTGCAGCTTCTGATGCCATTCTTGAAAGAAATGTTGCCAT
CAAGAAGCTAAACTGGCCATTTCAGAATCAACCCCATGCTATGCGGGCTTACAGAGAGCCAGTTCTTATGAAATGTGTTA
ATCACAAAAATATAATTGGTCTTTGAATGTTTTCACACCACAGAAATCTCTAGAAGAATTTCAAGATGTTTATATAGTCA
TGGAGTTCATGATGCAAATCTTTGCCAAGTGATTCAGATGGAACTAGGTCATGAAAGGATGTCCTACCTTCTCTATCAGA
TGCTGTGTGGAATCAAGCACCTTCACTCTGCTGGAATTATTCATCGGGACTTAAAGTCCAGTAATATAGTAGTAAAATCA
GACCGCACTTTGAAGGTTCTTGACCTTGAACTGGCCAGGACTGCAGGAACTAGTTTCATGATGACACCTTACATAGTGAC
TCACTATTGCAGAGCACCTGAAGTCATCCTAAGGATGGGCTACAAAGAAAACTTTGACATTTGGTCAGTTGGGTGCATCA
TGGGAGAAATGATCGAAAGTGGTGTTTTGTTCCCAGGTACAGATCACATTGATCAGTGGAATAAAGTTATTGAACTGCTT
GGGACACCATGTCCTGAATTCATGAAGAAACTACAACCAACA

Alignment

ORF - retro_mluc_888 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.82 %
• Parental protein coverage: 59.72 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  MSRSKRDSNFYSVEIGDSTFTVLKRYQNLKPIGSGAQG-IVCAAYDAILERNVAIKKLSRPFQNQTHAKR
          MSRSK.DSNF.SVEIGDSTFTVLK..QNLKPIGSGAQG.IVCAA.DAILERNVAIKKL..PFQNQ.HA.R
Retrocopy MSRSKCDSNFCSVEIGDSTFTVLK*DQNLKPIGSGAQG<IVCAASDAILERNVAIKKLNWPFQNQPHAMR

Parental  AYRELVLMKCVNHKNIIGL-LNVFTPQKSLEEFQDVYIVMELM-DANLCQVIQMELDHERMSYLLYQMLC
          AYRE.VLMKCVNHKNIIGL.LNVFTPQKSLEEFQDVYIVME.M.DANLCQVIQMEL.HERMSYLLYQMLC
Retrocopy AYREPVLMKCVNHKNIIGL<LNVFTPQKSLEEFQDVYIVMEFM<DANLCQVIQMELGHERMSYLLYQMLC

Parental  GIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVD
          GIKHLHSAGIIHRDLK.SNIVVKSD.TLK.LD..LARTAGTSFMMTPY.VT.Y.RAPEVIL.MGYKEN.D
Retrocopy GIKHLHSAGIIHRDLKSSNIVVKSDRTLKVLDLELARTAGTSFMMTPYIVTHYCRAPEVILRMGYKENFD

Parental  LWSVGCIMGEMVCHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPT
          .WSVGCIMGEM.....LFPG.D.IDQWNKVIE.LGTPCPEFMKKLQPT
Retrocopy IWSVGCIMGEMIESGVLFPGTDHIDQWNKVIELLGTPCPEFMKKLQPT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_888 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Ciona intestinalis	ENSCING00000009313	1 retrocopy	retro_cint_23,
Ciona savignyi	ENSCSAVG00000005955	1 retrocopy	retro_csav_12,
Dasypus novemcinctus	ENSDNOG00000008538	1 retrocopy	retro_dnov_2425,
Myotis lucifugus	ENSMLUG00000014533	1 retrocopy	retro_mluc_888 ,