RetrogeneDB ID: retro_mluc_872

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429780:6473915..6474610(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ATG5
• Ensembl ID: ENSMLUG00000014090
• Aliases: None
• Description: None

Sequence

>retro_mluc_872
ATGACAGATGACAAAGATGTGCTTCGAGATGTGTGGTTTGGTCGAATTTCAACTTGCTTCACCCTGTATCAGGATGAGAT
AGCTGAACGGGAGGCAGAACCATATTATTTACGTTTGCCAAGAGAAAGTTATTTGACGTTGGTAACTGACAAAGTGAAAA
GGCACTTTCAGAAGGTTATGGGACAAGAAGACATTAGTTAGATAAGGTTTGAACACAAAGGCACCCCACTGAAATGGTAT
TATCCAATTGGTTTGCTATTTGATCTTCTTGCATCGAGTTCAGCTCTTCCTTGGAACATCACAGTACATTTTAAGGGTTT
CCCAGAAAAGGACCTTCTGCACTGTCCATCTAAGGAAGCAATTGAAGCTCATTTTATGTCTGTGTGAAAGAAGCTGATGC
ATTAAAACACAAAAGCCAAATAATCAATGAAATACAGAAAAGAGATCACAAGCAGCTCTGGATGGGATTACATGACAGAT
TTGACCAGTTTGGGGCCATCAATTGGGAACTTATGGAATATCCTGCAGAAGAAAGTGGATTTTATTACATCCCTTTTAGA
ATATATCAGACAACAACTGAACGACTTTTCATTCAGAAGCTTTTTCATCCTGTGGCTACAGATGGACAATTGCATACTTT
AGGAGATCTCCTCAAATAAGTTTGTCCTGCGATTGCTCCTGAAGATGGGGAAAGA

Alignment

ORF - retro_mluc_872 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.61 %
• Parental protein coverage: 85.2 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MTDDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYLLLPRVSYLTLVTDKVKKHFQKVMRQEDISEIWF
          MTDDKDVLRDVWFGRI.TCFTLYQDEI.EREAEPYYL.LPR.SYLTLVTDKVK.HFQKVM.QEDIS.I.F
Retrocopy MTDDKDVLRDVWFGRISTCFTLYQDEIAEREAEPYYLRLPRESYLTLVTDKVKRHFQKVMGQEDIS*IRF

Parental  EHEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKGFPEKDLLHCPSKDTIEAHFMS-CVKEADALKHKS
          EH.GTPLKW.YPIGLLFDLLASSSALPWNITVHFKGFPEKDLLHCPSK..IEAHFMS.CVKEADALKHKS
Retrocopy EHKGTPLKWYYPIGLLFDLLASSSALPWNITVHFKGFPEKDLLHCPSKEAIEAHFMS<CVKEADALKHKS

Parental  QVINEMQKKDHKQLWMGLHNDRFDQFWAINRKLMEYPAEESGFRYIPFRIYQTTTERPFIQKLFRPVATD
          Q.INE.QK.DHKQLWMGLH.DRFDQF.AIN..LMEYPAEESGF.YIPFRIYQTTTER.FIQKLF.PVATD
Retrocopy QIINEIQKRDHKQLWMGLH-DRFDQFGAINWELMEYPAEESGFYYIPFRIYQTTTERLFIQKLFHPVATD

Parental  GQLHTLGDLLKEVCPSAIAPEGIDGER
          GQLHTLGDLLK.VCP.AIAPE..DGER
Retrocopy GQLHTLGDLLK*VCP-AIAPE--DGER

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_872 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000006399	1 retrocopy	retro_chof_1928,
Dasypus novemcinctus	ENSDNOG00000013004	2 retrocopies	retro_dnov_1805, retro_dnov_950,
Myotis lucifugus	ENSMLUG00000014090	1 retrocopy	retro_mluc_872 ,
Ictidomys tridecemlineatus	ENSSTOG00000016507	1 retrocopy	retro_itri_1724,