RetrogeneDB ID: retro_mluc_847

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429779:11188385..11189626(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CAP1
• Ensembl ID: ENSMLUG00000011626
• Aliases: None
• Description: Adenylyl cyclase-associated protein [Source:UniProtKB/TrEMBL;Acc:G1PIQ0]

Sequence

>retro_mluc_847
AGTGTACCCCGTGCCTCTGGAATGCACTGTGGGTCTGGAGACAGTGCTCCAAAAGCAGGGTCTGTTCCCTACGTGGAAGC
ATTTGACTCACAGCCAGCTAGTCCTGTGACAGACTACCTGAAAATCAGGAAAGAGATTGGAGGAGACGTGCAGTCACAGG
CGGAGATGGTGCATACAGGGCTGAAGTTGGAGTGAGCTCTCTTGGTTATAGCCTCTCAGTGTCAGCAGCCAACAGATAAT
CAGCTTTCTGATTTGTTGGCTCCCATCTCAGAGCAGATCCAAGAAGTGATAACTTTTCCAGAGGAGAACCAAGGCAGCAA
GTTGTTCAATTACCTGTCAAGCTGCCAGCGAAAGTATCCAAGCCCTGGGCTGGGTGGTATGGCTCCCAAGCCTGTTCCTT
AAGTGAAAGAAATGAATGATGCTGCCATGTTTTATACAAACCAAGTCCTCAGGGAGTACAAAGATATGGAGAAGAGCATG
TGGACTGGTCAAAATGTACTTGAGTATGTGGATAGAGCTGCAGGCTTACGATAAAAGAGTTCCATACGGTGGTTCTGGCC
CGGAGCAAAATGGGGCCCATGACAAAAGAACTGAGTGGCTTGCCATCTGGACCCTCTGCTGGATCAAATCCCACCCCCTT
TCCTGCCAAGCCCACCTCCCCTTCCAAAGCCTATCCTACCAGTTCAAGATCAGATGTCTCCACTTCATACTCAGCACTGA
GCAGATTAATCAGGGAGAGCATCACACATGCACTGAAACATGTACCTGATGACATGGAGACTCACAAGAACCCTGCCCTG
GAGGCTCAGAGTGGTCCAGTACGAAGTGGCCCCAAGATATTCTCTTACCTAAACCAGGAGTCAGCCCATCCCCTAACACA
GCCACAAAGAAGGAGCCAGCTCTGCCTTGAACTGGAGGGCAAGAGCAGAGAGTGGAACATCAGGAGAACATTTCCAACCT
GGTAATTGTTGGCACAGAGCTGAACCAAGTGGCTTATATATACAAGTGTGTTAATATGGCATTGCAAATTAAGAGCAAAA
TTAACTCCATTATATTAGACAACTGTAAGAAACTGTCTGGTGTTCTATGATGCAGTGGGCATCATGGAGATAATCAATAA
TAGGGATGACAGAGTTCAGGTAATGGGAAAAGTGCCAGGGATTTCCATCAACAAAACAGATGGCTGTCACGTTTACCTGG
GCAAGAATTCCCTAGCGTGTGAGATAGTCAGTGCCAAATCT

Alignment

ORF - retro_mluc_847 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.18 %
• Parental protein coverage: 87.37 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 9

Retrocopy - Parental Gene Alignment:

Parental  AVSHASDMHCGYGDSAPKAGAVPYVQAFDSLLAGPVAEYLKISKEIGGDVQKHAEMVHTGLKLERALLVT
          .V..AS.MHCG.GDSAPKAG.VPYV.AFDS..A.PV..YLKI.KEIGGDVQ..AEMVHTGLKLE.ALLV.
Retrocopy SVPRASGMHCGSGDSAPKAGSVPYVEAFDSQPASPVTDYLKIRKEIGGDVQSQAEMVHTGLKLE*ALLVI

Parental  ASQCQQPGGNKLSDLLAPISEQIQEAITFREKNRGSKLFNHLS-AVSESIQALGWVA-VAPKPGPYVKEM
          ASQCQQP..N.LSDLLAPISEQIQE.ITF.E.N.GSKLFN.LS.A.SESIQALGWV...APKP.P.VKEM
Retrocopy ASQCQQPTDNQLSDLLAPISEQIQEVITFPEENQGSKLFNYLS>AASESIQALGWVV<MAPKPVP*VKEM

Parental  NDAAMFYTNRVLKEYKDVDK-KHVDW-VKTYLSIWTELQAY-IKEFHTTGLAWSKTGPVAKELCGLPSGP
          NDAAMFYTN.VL.EYKD..K..HVDW.VK.YLS.W.ELQAY.IKEFHT..LA.SK.GP..KEL.GLPSGP
Retrocopy NDAAMFYTNQVLREYKDMEK<EHVDW<VKMYLSMWIELQAY>IKEFHTVVLARSKMGPMTKELSGLPSGP

Parental  SAVSGPPPPPPGPPPPPM--PTSSGSDDSASRSALFAQINQGEAITHALKHVPDDMKTHKNPALKAQSGP
          SA.S.P.P.P..P..P....PTSS.SD.S.S.SAL...I...E.ITHALKHVPDDM.THKNPAL.AQSGP
Retrocopy SAGSNPTPFPAKPTSPSKAYPTSSRSDVSTSYSALSRLIR--ESITHALKHVPDDMETHKNPALEAQSGP

Parental  VRSGPKPFS-APKPGVNPSPKPATKKEPAL-LELEGK-KWRVENQENVSNLVIDDTELKQVAYIYKCVNT
          VRSGPK.FS..PKPGV.PSP..ATKKEPAL.LELEGK...RVE.QEN.SNLVI..TEL.QVAYIYKCVN.
Retrocopy VRSGPKIFS<LPKPGVSPSPNTATKKEPAL>LELEGK<EQRVEHQENISNLVIVGTELNQVAYIYKCVNM

Parental  TLHIKGKINSITVDNCKKLG-LVFDDVVGIVEIINSRDVKVQVMGKVPTISINKTDGCHVYLSKNSLDCE
          .L.IK.KINSI..DNCKKL.....D..VGI.EIIN.RD..VQVMGKVP.ISINKTDGCHVYL.KNSL.CE
Retrocopy ALQIKSKINSIILDNCKKLS>VFYD-AVGIMEIINNRDDRVQVMGKVPGISINKTDGCHVYLGKNSLACE

Parental  IVSAKS
          IVSAKS
Retrocopy IVSAKS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_847 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000003012	2 retrocopies	retro_cfam_1316, retro_cfam_645,
Macropus eugenii	ENSMEUG00000004960	1 retrocopy	retro_meug_544,
Myotis lucifugus	ENSMLUG00000011626	1 retrocopy	retro_mluc_847 ,