RetrogeneDB ID: retro_mluc_837

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429779:3969398..3969663(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FOPNL
• Ensembl ID: ENSMLUG00000004411
• Aliases: None
• Description: None

Sequence

>retro_mluc_837
CAATTTCTCCTCCATGAGCTAAATGCATTAGAAGAATCAAAGGATAATACAATACCTCTTTTATGTGGGATTTTAGCTCA
CTTCTTGCATGAAACTAAGGATGGCATTCATAATACATTTCTGAGAGGATCTTCACTTCAGCCTCTAAACCCAAACCATG
GTAGACAACCTAGTGGAAGAAGGCAAATGGACGACCACCCACGAAAAGAGAAGGGGGAAAAATACTGATATTAGAGATCT
TCATATTTCTCAACCTATGAAGAGA

Alignment

ORF - retro_mluc_837 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.65 %
• Parental protein coverage: 50.57 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  QFLIRELNAFEESKDNTIPLLYGILAHFLHGTKDGIQHTFLKGSSLQPLNANPGRQPSGREQMDDHLIKE
          QFL..ELNA.EESKDNTIPLL.GILAHFLH.TKDGI..TFL.GSSLQPLN.N.GRQPSGR.QMDDH..KE
Retrocopy QFLLHELNALEESKDNTIPLLCGILAHFLHETKDGIHNTFLRGSSLQPLNPNHGRQPSGRRQMDDHPRKE

Parental  K-GKNTNVEDLHISQNVKR
          K.GKNT...DLHISQ..KR
Retrocopy K>GKNTDIRDLHISQPMKR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_837 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000004411	1 retrocopy	retro_mluc_837 ,
Monodelphis domestica	ENSMODG00000004204	6 retrocopies	retro_mdom_1116, retro_mdom_1500, retro_mdom_1902, retro_mdom_383, retro_mdom_396, retro_mdom_715,