RetrogeneDB ID: retro_mluc_832

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429778:1009993..1010385(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: LSM4
• Ensembl ID: ENSMLUG00000004010
• Aliases: None
• Description: None

Sequence

>retro_mluc_832
CTCCCGTTGTCACTGCTGAAGACGGCTCAGAATCACCCCATGTTAGTGGAGCTTAAAAACGGGGAGCACCTGGTAAGCTG
TGAGAACTGGATGAACATCAACCTGCACGAGGTAATCTGCACATCTAGGGACAGGACAAGTTCTGGCAGATGCTCCAGTG
CTACATTCGAGGCAGCACCATTAAGTACCTGCACATCCCCAATGAGATCATTGACATGGTCAAAGAAGAGGTGGTGCCAA
GGGTCATGGCCGTGGTGACCTGCAGCAGCAGAAGCAGCAGAAAGGCCGTGGCATGGGGGGTGCTGGACGAGGTGTGTTTG
GCGCCGTATTAGGGGCGGAATCTCAGACACTGGCAGAGGTCAGCCAGAAAGAAACCCGGCTGGCAGGCGGGC

Alignment

ORF - retro_mluc_832 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.57 %
• Parental protein coverage: 97.84 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDG-DKFWRMPECYIRGSTIKYLR
          LPLSLLKTAQNHPMLVELKNGE....HLVSC.NWMNINL.EVICTSRD..DKFW.M..CYIRGSTIKYL.
Retrocopy LPLSLLKTAQNHPMLVELKNGE----HLVSCENWMNINLHEVICTSRDR<DKFWQMLQCYIRGSTIKYLH

Parental  IPDEIIDMVKEEVV-AKGRGRGGLQQQKQQKGRGMGGAGRGVFGG-RGRGGIPGTGRGQPE-KKPGRQAG
          IP.EIIDMVKEEVV.AKG.GRG.LQQQKQQKGRGMGGAGRGVFG..R.RGGI..TGRGQPE.KKPG.QAG
Retrocopy IPNEIIDMVKEEVV<AKGHGRGDLQQQKQQKGRGMGGAGRGVFGA<RIRGGISDTGRGQPE<KKPGWQAG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_832 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000014900	1 retrocopy	retro_cfam_1954,
Echinops telfairi	ENSETEG00000007762	2 retrocopies	retro_etel_1656, retro_etel_51,
Latimeria chalumnae	ENSLACG00000015861	1 retrocopy	retro_lcha_28,
Myotis lucifugus	ENSMLUG00000004010	1 retrocopy	retro_mluc_832 ,