RetrogeneDB ID: retro_mluc_79

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429949:2070456..2071626(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000027019
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000015764
• Aliases: None
• Description: None

Sequence

>retro_mluc_79
ACGATGGAGCTCAGACTAACCCCGGCCAGAAATCTGGACAAGTTCATCGAAGACCACCTCCGGCCAGACACGCCTTTCCG
CAGGAGGGTCAAAAAAGCCATCGATGCCATCTGCAGTTTCCTCAAAGAGAGGTGTTTCCAAGGTGCCCCCCACCGAGTCC
GGGTGTCCAAAGTGGTGAAGGGCGGCTCCTCGGGCAAAGGCACGACCCTCAGAGGCCGCTCTGACGCTGACCTCGTGGTC
TTCCTCAGCGAGCTCAGAAGTTTTCAGGAGCAGTTGGAGCGCCGAGGGGAGTTCATCTGGGAAATCATACGACAGCTGGA
AGCCTTTCAGAGAGAGACAGGAGTGGAGTTTGAGATCCATGAGCCTCGATGGGAGAAACCCCGCGCGCTCAGCTTTGTGT
TCTGGTCCCCCTGGCTGGACGAGAAGGTGGAGTTTGATGTACTGCCTGCCTTTGACATCCTGGGTCAGTGGGGTCCTGTG
CCGCACATCCACGAGGGCTACAGACCTAATCCCCAAATCTACGTCCGGCTCATCAACGAGTGCACGCGCCTGGGGAAGGA
GGGCGAGTTCTCCCCCTGCTTCACGGAGCTGCAAAAAGCCTTCCTGCGGCAGCGGCCGACCAAGCTCAAGAGCCTCATCC
GCCTGGTCAAGCACTGGTACCAGCTGTGCAAGCAGCGCCTGGGGAAGCCGCTGCCGCCGCAGTACGCCCTGGAGCTGCTG
ACCGTCCACGCCTGGGAGCGTGGGTGCAAGGAGACCTACTTCAGCACCGCTGAGGGGTTTCGGACGGTCTTGGAACTAGT
CGTGCACTACCGGCAGCTTTGCGTCTACTGGACTAAGTATTACGACTTTGAAAATCCTGTCATTTGTCAATATCTGATGA
CACAGCTCGAGCAACCCATGCCCGTGATTCTGGACCCGGCTGATCCTACCGGAAACGTTGCAGGTGGAGGCGGCTGGCAG
CGGCTGGCACAAGAGGCTGCAGCCTGGATGACGTACCCATGCTTGAAGAATTGGGATGGGTCTCCAGTGGACTCCTGGGA
CACAGGGCTCCCAAGAGAGAGAGAAGATAGCTCGACCTCCACAACAGATGATGATGATGAACAGGACTCTGAATACCATA
CCTACAAACGATACCAGGAGGACGAGAGCTGGACATGTGCCATCCTCTGA

Alignment

ORF - retro_mluc_79 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.84 %
• Parental protein coverage: 57.68 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  FDVLPAYDVLGHVTESYRPDPDVYVRLIRECEKLGKEGEFSPCFTELQRAFLKQRPAKLKSLIRLVKHWY
          FD.L.......H..E.YRP.P..YVRLI.EC..LGKEGEFSPCFTELQ.AFL.QRP.KLKSLIRLVKHWY
Retrocopy FDILGQWGPVPHIHEGYRPNPQIYVRLINECTRLGKEGEFSPCFTELQKAFLRQRPTKLKSLIRLVKHWY

Parental  QKCKEKPGQSLPPQYALELLTVYAWERAGRETDFITAQGFRTVLELVMNYRQLCIHWTQYYDCSHPEIGP
          Q.CK...G..LPPQYALELLTV.AWER...ET.F.TA.GFRTVLELV..YRQLC..WT.YYD...P.I..
Retrocopy QLCKQRLGKPLPPQYALELLTVHAWERGCKETYFSTAEGFRTVLELVVHYRQLCVYWTKYYDFENPVICQ

Parental  YVRRQLQKPRPVILDPADPTGNVAGGKPERWEPLAGEARVWMTYPCFRKGDGSPVGSWD
          Y...QL..P.PVILDPADPTGNVAGG....W..LA.EA..WMTYPC....DGSPV.SWD
Retrocopy YLMTQLEQPMPVILDPADPTGNVAGG--GGWQRLAQEAAAWMTYPCLKNWDGSPVDSWD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_79 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000015764	1 retrocopy	retro_mluc_79 ,
Monodelphis domestica	ENSMODG00000003252	1 retrocopy	retro_mdom_1629,
Mus musculus	ENSMUSG00000032623	1 retrocopy	retro_mmus_2720,