RetrogeneDB ID: retro_mluc_744

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429774:1158558..1159372(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000023214
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: C16ORF42
• Ensembl ID: ENSMLUG00000008158
• Aliases: None
• Description: Probable ribosome biogenesis protein C16orf42 homolog [Source:UniProtKB/TrEMBL;Acc:G1PAV2]

Sequence

>retro_mluc_744
ATGGGCCGCCGAGGGCAGCGCGCGGGCCGGGGGCGAAGGCGGCCGCACTCGGCGTCCCGCGGGCGGCTCTCTGGAAGCGT
TCGCTGAGGAAGTGAGCGTCGCGCTGCGCGCGTCCGTGGAGCCAGAGACGGCGAGGACAGGGACAGCCGGAGCCCAGCGG
CGCTGCCTTGCACGCTAGCCATGTGGGAGCAGGGCCACTGCGACCCCCGGGCGCTGCACCGGCCGCAAGCTGGCCCGCCT
AGGCCTGGTGCGCTGCCTGCGCCTCGGTCACAGGTTCGGCGGCCTCGTGCTCAGCCCCATGGGCTCCCAGTACGTGTCCC
CCGCTGACAGACAGCTGGTGGCACAGTCGGGCGTGGCTGTCATCCACTGCTCCTGGGCCAGACTGGAGGAGACGCCCTTT
GGGAAGATGCGGGGCAGTCACTTTCGGCTGCTGCCTCACCTGGTGGCTGCCAACCCTGTGAACTATGGCCGGCCCTGCAA
ACTGTCCTGTGTGGAGGCTTTTGCGGCTACCTTCTGCATCCTGGGCTTCTCAGACCTTGCTGTCATTTTGCTGCGGAAGT
TCAAGTGGGGCAAGGCCTTCCTAGACCTGAACCGTCAGCTCTTGGACAAGTATGCAGCCTGCTGTGGCCCAGAGGAGGTG
CTGCAGGCAGAGCAGGAGTTCCTGGCCCATGCTAAGGAGCGCCCTGAGGAGGAGATCGATCCCTTTGATGTGGATTCAGG
TCGAGAGTTTGCAAATCCCAACAGGCCCGTGGCTGGCACCCGGTTGCCCAGGGACAGTGATGACAGTGACAGTGAGGAGG
AGTCTGAGGCACTA

Alignment

ORF - retro_mluc_744 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.65 %
• Parental protein coverage: 85.49 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  MGRR-RAARGPGA-EGGRTRRPAGRSLEAFAEEVSVALRASVEPETA-EDRDSRSSAPLPCTLAMWELGH
          MGRR.RAARGPGA.EGGRTRRPAG.SLEAFAEEVSVALRASVEPETA.EDRDSRS.A.LPCTLAMWE.GH
Retrocopy MGRR<RAARGPGA<EGGRTRRPAGGSLEAFAEEVSVALRASVEPETA<EDRDSRSPAALPCTLAMWEQGH

Parental  CDPR-RCTCRKLARLGLMSCLRLGHRFGGLCWPP--EPYAAPG-RQLVAQSGVAVIDCSWARLEETPFGK
          CDPR.RCT.RKLARLGL..CLRLGHRFGGL...P....Y..P..RQLVAQSGVAVI.CSWARLEETPFGK
Retrocopy CDPR>RCTGRKLARLGLVRCLRLGHRFGGLVLSPMGSQYVSPADRQLVAQSGVAVIHCSWARLEETPFGK

Parental  MRGSHFRLLPHLVAANPVNYGRPCKLSCVEAFAATFCILASGFSDLAVILLRKFKWGKAFLDLNRQLLDK
          MRGSHFRLLPHLVAANPVNYGRPCKLSCVEAFAATFCIL..GFSDLAVILLRKFKWGKAFLDLNRQLLDK
Retrocopy MRGSHFRLLPHLVAANPVNYGRPCKLSCVEAFAATFCIL--GFSDLAVILLRKFKWGKAFLDLNRQLLDK

Parental  YAACCGPEEVLQAEQEFLAHAKERPEEEIDPFDVDSGREFANPNRPVAGTRLPRDSDDSDIEEESEAL
          YAACCGPEEVLQAEQEFLAHAKERPEEEIDPFDVDSGREFANPNRPVAGTRLPRDSDDSD.EEESEAL
Retrocopy YAACCGPEEVLQAEQEFLAHAKERPEEEIDPFDVDSGREFANPNRPVAGTRLPRDSDDSDSEEESEAL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_744 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Equus caballus	ENSECAG00000013501	1 retrocopy	retro_ecab_893,
Macropus eugenii	ENSMEUG00000007498	1 retrocopy	retro_meug_117,
Myotis lucifugus	ENSMLUG00000008158	1 retrocopy	retro_mluc_744 ,
Tursiops truncatus	ENSTTRG00000011979	1 retrocopy	retro_ttru_630,