RetrogeneDB ID: retro_mluc_742

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429773:20460795..20460977(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PPP1R14B
• Ensembl ID: ENSMLUG00000022952
• Aliases: None
• Description: None

Sequence

>retro_mluc_742
CAGGAAGAGACGATCCCGGAGCTGGAGATTGACGGGGATGAACTTCTGGACATGGAGAGAGATGGTATCTTGGATGCCAG
GGTCAAGGAGCTGCTAGTTGACTGTTACAAACCCATGAGGTCTTAATTTCTAGCCTTTTGGACAAGAGTGGAGGCATGCA
GAAGCTGAGCACACTCCCGAAG

Alignment

ORF - retro_mluc_742 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.19 %
• Parental protein coverage: 84.72 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  QEEEIPELEIDVDELLDMESDDTRAARVKELLVDCYKPT-EAFISGLLDKIRGMQKLSTPQK
          QEE.IPELEID.DELLDME.D....ARVKELLVDCYKP..E..IS.LLDK..GMQKLST..K
Retrocopy QEETIPELEIDGDELLDMERDGILDARVKELLVDCYKPM<EVLISSLLDKSGGMQKLSTLPK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_742 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000022952	3 retrocopies	retro_mluc_466, retro_mluc_602, retro_mluc_742 ,
Myotis lucifugus	ENSMLUG00000023245	2 retrocopies	retro_mluc_1095, retro_mluc_499,