RetrogeneDB ID: retro_mluc_74

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429987:1978904..1981004(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000001921
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000006341
• Aliases: None
• Description: None

Sequence

>retro_mluc_74
ACCATGCCAGCCCACGAGCTGCTCCGGTATTTTCGGATACCGGAGCTGGCCGACTTCCGACAGTACGTCCGCGCGCTCCC
AGCCAACTCGCTCACGGGCTTCGACGCGCTCACCGCTTTCACCATTCTGTGGTTTGCCATGAGGCCCAGGGCGCCCACGC
CCCCGAGCGCCCTCGCCATGCAGTCGGTGGAGGTGGCGGGCAGCGGCGGCGCGCGGCGGTCCGCGCTCCTGGACAGCGAC
GAGCTCCTGGTGTACCTGTACGAGGACGTCAGGACCGTGCACCAAGCTTTCCAGAGGGGCGTCCGCCTGTCCAATAACGG
CCCTTGTCTGGGCTTCCGGATGCCGGACGGGCCCTATGAATGGCTCTCCTACCAGCAGGTGGCGGAGATGTCCGAGTGCG
TGGGCTCGGCCATGATCCAGATGGGCTTCGGGGCGGCACCGGACCAGAACATCGGCATCTTCTCCCAGAACAGACCCGAG
TGGGTGGTCATCGAGTTCGGATGCTTTGCTTACTCCATGGTGGCCGTCCCCCTCTATGACACCCTGGGAACCGAAGCCGT
CACTCACATCGTCAACACTGCGGAACTCGCCCTGGTGTTCGTGGACAAGCCCGAGAAGGCCAGCCTGCTGCTGGAAGGGG
TAGAAAACAAGTCGACCCCGGGCCTCAGAACCGTCGTGGTCATGGACTCCTACGGCAGCGACCTGACGGCACGCGGCGAG
AGGTGCGGGGTGGAGATCGTCAGCATGAAGGCCGTGGGGGACCTGGGAAGAGCCCACAGAAAGACGCCCCAGCCGCCCGT
GCCTGAAGACCTTGCAGTCATTTGTTTCACAAGTGGCACCACCGGCAACCCCAAGGGGGCCATGATCACCCATCGCAACA
TGGTGAGCGACTTCTCGGCGTTTCTGAAAGTGACCGAGAAGGTCATTCACCTGGATGTCAGTGACACACACATTTCGTTT
TTACCGCTTGCACACATGTACGAGCAGCTCTTGCAGTGTGCGATCCTGTGCCACGGAGCGAAAATAGGCTTTTTCCAAGG
AGACCTCAAGCTGCTTATGGATGACCTCAAAGTGCTTCAGCCCACCATCTTTCCTGTGGTCCCGAGGCTGCTGAACCGGA
TGTTCGACAGAATTTGGGGGCAGGCCAACACCACCCTGAAGCGGTTGCTACTGGACTTCGCCTCCAAGAGGAAACAAACA
GAACTTCGCAGTGGCATCATTAGAAACGACAGCCTGTGGGACAAACTGATCTTCCGCAAAATACAGTCCAACCTGGGAGG
GAAGGTCCGGCTGATGATCACGGGGGCTGCGCCCGTGTCAGACACGGTGCTGACGTTTATGCGAGCGGCGCTGGGCTGTC
ATTTCTACGAAGGCTATGGGCAGACTGAGGGCACAGCCTGCTGCTCGATGACCGTTCCCAGAGAGTGGACCGCAGGCCAT
GTCGGTGCCCCCGTGCCTTGCAATCTGATAAAACTCATCGATGTGAAAGAGATGAACTACCTGGCTGCCAACGGCGAGGG
CGAGGTGTGTGTGAAAGGCTCAAATGTATTTCAAGGCTACCTGAAGGACCCGGTGAAGACAGCGGAAGCTCTGGACAAAG
GTGGCTGGTTGCACACAGGGGACATTGGGAAATGGTTACCCAATGGGGCCTTGAAGATCATCGACAGGAAGAAGCACATA
TTTAAACTGGCACAAGGAGAATACATAGCACCCGAAAAGATCGAGACTATCTACGTACAGAGCGAACCCGTTGCTCAGGT
GTTCGTCCATGGAGACAGCTTGCAGGCATTTCTCATAGCGATCGTGGTCCCCGACGTGGAGACGCTGGGCCTCTGGGCGG
GGAATCGAGGCCTGGTGGGATCCTTCGAGGAGCTGTGCCGCAGCAAGGATGTCAAGAAAGCCATCCTAGAGGATTTGGTG
AGGCTGGGGAAGGACTCTGGCCTGAAGCCATTCGAGCAGGTCAAAGGCATCGCTCTCCACCCTGAACTGTTCTCTATCGA
AAACGGCCTTCTGACCCCGACAATGAAGGCAAAAAGGCCACAACTTCAGAATTATTTCAAGTCACAGATAGAGGAACTTT
ATTCCACCACCAAAGTTTAA

Alignment

ORF - retro_mluc_74 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.03 %
• Parental protein coverage: 99.86 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MQAHELFRYFRMPELADFRQYVRTLPTNTLMGFGAFAALTTFWYATRPRALKPPCDLSMQSVEVAGSDGA
          M.AHEL.RYFR.PELADFRQYVR.LP.N.L.GF.A..A.T..W.A.RPRA..PP..L.MQSVEVAGS.GA
Retrocopy MPAHELLRYFRIPELADFRQYVRALPANSLTGFDALTAFTILWFAMRPRAPTPPSALAMQSVEVAGSGGA

Parental  RRSTLLDSDEPMAYFYDDVRTVYEGFQRGIQVSNNGPCLGSRKPDQPYEWLSYKQVEEMSECVGSALIQK
          RRS.LLDSDE...Y.Y.DVRTV...FQRG...SNNGPCLG.R.PD.PYEWLSY.QV.EMSECVGSA.IQ.
Retrocopy RRSALLDSDELLVYLYEDVRTVHQAFQRGVRLSNNGPCLGFRMPDGPYEWLSYQQVAEMSECVGSAMIQM

Parental  GFKAAPDQYIGIFAQNRPEWVIIEQGCFAFSMVVVPLYDTLGTEAITYIVNKAELSLVFVDKPEKANLLL
          GF.AAPDQ.IGIF.QNRPEWV.IE.GCFA.SMV.VPLYDTLGTEA.T.IVN.AEL.LVFVDKPEKA.LLL
Retrocopy GFGAAPDQNIGIFSQNRPEWVVIEFGCFAYSMVAVPLYDTLGTEAVTHIVNTAELALVFVDKPEKASLLL

Parental  EGVENKLTPGLKVVVLMDSYGSELVERGKKCGVEITSMKAMEDLGRANRKKPKPPAPEDLAVICFTSGTT
          EGVENK.TPGL..VV.MDSYGS.L..RG..CGVEI.SMKA..DLGRA.RK.P.PP.PEDLAVICFTSGTT
Retrocopy EGVENKSTPGLRTVVVMDSYGSDLTARGERCGVEIVSMKAVGDLGRAHRKTPQPPVPEDLAVICFTSGTT

Parental  GNPKGAMITHRNIVSDASGFVKVTENIVNPTPDDTLISFLPLAHMFERVVECVMLCHGAKIGFFQGDIRL
          GNPKGAMITHRN.VSD.S.F.KVTE........DT.ISFLPLAHM.E....C..LCHGAKIGFFQGD..L
Retrocopy GNPKGAMITHRNMVSDFSAFLKVTEKVIHLDVSDTHISFLPLAHMYEQLLQCAILCHGAKIGFFQGDLKL

Parental  LMDDLKVLQPTIFPVVPRLLNRMFSQIFGQANTTLKRWLLDFASKRKEAELRSCIIRNNSLWDKLIFRKI
          LMDDLKVLQPTIFPVVPRLLNRMF..I.GQANTTLKR.LLDFASKRK..ELRS.IIRN.SLWDKLIFRKI
Retrocopy LMDDLKVLQPTIFPVVPRLLNRMFDRIWGQANTTLKRLLLDFASKRKQTELRSGIIRNDSLWDKLIFRKI

Parental  QSNLGGKVRLMITGAAPVSATVLTFLRAALGCQFYEGYGQTECTAGCSLTIPGDWTAAHAGHVGAPMPCN
          QSNLGGKVRLMITGAAPVS.TVLTF.RAALGC.FYEGYGQTE.TA.CS.T.P..WTA...GHVGAP.PCN
Retrocopy QSNLGGKVRLMITGAAPVSDTVLTFMRAALGCHFYEGYGQTEGTACCSMTVPREWTA---GHVGAPVPCN

Parental  LIKLVDVEEMNYLAAKGEGEVCVKGPNVFQGYLKDPAKTAEALDKDGWLHTGDIGKWLPNGALKIIDRKK
          LIKL.DV.EMNYLAA.GEGEVCVKG.NVFQGYLKDP.KTAEALDK.GWLHTGDIGKWLPNGALKIIDRKK
Retrocopy LIKLIDVKEMNYLAANGEGEVCVKGSNVFQGYLKDPVKTAEALDKGGWLHTGDIGKWLPNGALKIIDRKK

Parental  HIFKLAQGEYIAPEKIENIYLRSEPVAQVFVHGESLQAFLVAIVVPDVETLGRWAGKRGLAGSFEELCRS
          HIFKLAQGEYIAPEKIE.IY..SEPVAQVFVHG.SLQAFL.AIVVPDVETLG.WAG.RGL.GSFEELCRS
Retrocopy HIFKLAQGEYIAPEKIETIYVQSEPVAQVFVHGDSLQAFLIAIVVPDVETLGLWAGNRGLVGSFEELCRS

Parental  KEVKKAILEDLVRLGKESGLKPFEQVKGLALHPELFSIENGLLTPTMKAKRPELRNYFRSQIDELYSTIK
          K.VKKAILEDLVRLGK.SGLKPFEQVKG.ALHPELFSIENGLLTPTMKAKRP.L.NYF.SQI.ELYST.K
Retrocopy KDVKKAILEDLVRLGKDSGLKPFEQVKGIALHPELFSIENGLLTPTMKAKRPQLQNYFKSQIEELYSTTK

Parental  V
          V
Retrocopy V

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_74 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000006341	1 retrocopy	retro_mluc_74 ,
Otolemur garnettii	ENSOGAG00000001689	1 retrocopy	retro_ogar_1485,