RetrogeneDB ID: retro_mluc_723

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429772:13465504..13465854(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: LSM1
• Ensembl ID: ENSMLUG00000003734
• Aliases: None
• Description: None

Sequence

>retro_mluc_723
AAGCACTTGGTCCTGTTTCGAAATGGAAGGATACTTACAGGCATTTTGAGAAGCATCGGTGAATTTGCTAATTTATGCTA
CATCAGACTGTGGAGCATATTCAGGTGGGCAAAAACTATGATGATATCCCTAGAGGGATTTTGGTGGTCATAGGAGAAAA
TTGGTTCTTCTGGGAGAAATAGACTTTGGAAAGTAGAGTGACACACCCCTCCGGCACATGTCCATTGAAGAAATCTTAGA
GGAACAATGGGTAGAACAGCAGATGAACTAGAAGCTGAGAAGTTGCAAGTTTAGACTTTAAAGGTCCAGGTCTCTCCATT
CCCAAGCAGATAGATACTCTTGATGACTAT

Alignment

ORF - retro_mluc_723 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 68.85 %
• Parental protein coverage: 87.97 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  KHLVLLRDGRTLIGFLRSIDQFANL-VLHQTVERIHVGKKYGDIPRGIFVVRGEN-VVLLGEIDLEKESD
          KHLVL.R.GR.L.G.LRSI..FANL..LHQTVE.I.VGK.Y.DIPRGI.VV.GEN..VLLGEID..K.SD
Retrocopy KHLVLFRNGRILTGILRSIGEFANL<MLHQTVEHIQVGKNYDDIPRGILVVIGEN<LVLLGEIDFGK*SD

Parental  TPLQQVSIEEILEEQRVEQQ-TKLENEKLKVQALKDR-GLSIPR-ADTLDEY
          TPL...SIEEILEEQ.VEQQ...LE.EKL.V..LK...GLSIP...DTLD.Y
Retrocopy TPLRHMSIEEILEEQWVEQQ<DELEAEKLQV*TLKVQ<GLSIPKQIDTLDDY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_723 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000011141	1 retrocopy	retro_amel_263,
Myotis lucifugus	ENSMLUG00000003734	1 retrocopy	retro_mluc_723 ,
Mustela putorius furo	ENSMPUG00000009883	1 retrocopy	retro_mputfur_490,
Mus musculus	ENSMUSG00000037296	1 retrocopy	retro_mmus_3725,
Oryctolagus cuniculus	ENSOCUG00000015399	1 retrocopy	retro_ocun_1276,
Sarcophilus harrisii	ENSSHAG00000017260	1 retrocopy	retro_shar_532,