RetrogeneDB ID: retro_mluc_718

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429772:18791377..18792749(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000025138
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: HIAT1
• Ensembl ID: ENSMLUG00000002112
• Aliases: None
• Description: None

Sequence

>retro_mluc_718
CCTCAGGGAATAGGCTCTCCCAGTGTGTACCACGCAGTCATCATCATCTTTTTGGAGTTTTTTGCTTGGGGATTATTGAC
GGCACCCACGTTGGTGATGTTACATGAAACCTTCCCTAAACATACATTTCTGATGAATGGCCTGATTCAAGGAGTCAAGG
GTCTGCTGTCCTTCCTCAGCGCCCCACTCATTGGTGCTCTTTCTGACGTCTGGGGCCGGAAGTCCTTCTTGCTGCTGACA
GTGTTTTTCACCTGCGCCCCGATCCCTTTAATGATGATCAGCCCATGGTGGTACTTTGCCGTCATCTCTGTGTCTGGGGT
GTTTGCAGTGACGTTCTCCGTGGTGTTCGCATACGTGGCGGACATAACCCAAGAGCATGAAAGAAGCATGGCCTATGGAC
AGGTCTCCGCCACGTTTGCCGCGAGCTTGGTGATCAGCCCTGCCATCGGCGCATACTTGGGCCAGGTGTATGGCGACAGC
CTGGTGGTGGTCCTGGCGACAGCGATCGCGCTGCTGGACATTTGCTTCATCCTGGTGGCTGTGCCTGAGAAGATGCGGCC
CGTATCCTGGGGGGCACCCAACTCCTGGGAGCAGGCCAACCCCTTCGCATCCTTGAAGAAGGTGGGCCAGGACTCCATCA
TGCTGCTCATCTGCATCACTGTGTTCCTCTCCTACCTCCCAGAGGCAGGCCAGTACTCCAGCTTCTTCCTGTACCTCAGG
CAGATAATGAAGTTTTCACCAGAAAGTGTCGCGGCCTTTATCGCAGTCCTCGGCATCCTCTCCATCATTGCACAGACCAT
AGTCTTGAGTTTACTCATGAGATCCATTGGAAATAAGAACACCATTTTGTTGGCCTGGGATTTCAAATCTTACAGCTGGC
ATGTATGGCTTCTGTTCAGAACCTTGGATGATGTGGGCCGCAGTGGCCATGGCCGCCATGTCCAGTATCACCCTTCCTGC
CATCAGTGAGCTCGTGTCCCGAACTGCTGATGCCGACCAACAAGGTGTTGTTCAAGGGATGATAACAGGAATTCGGGGGC
TGTGCAACGGTCTGGGACCAGCTCTCTACGGGTTCATTTTCTACTTATTCCACGTGGAACTGAAAGAGCTGCCAATGACA
GGAACGGACTTGGGGACAAACACCAGCCCACAGCACCACTTTGAACAGAACTCCATCATCCCTGGCCCGCCCTTCCTCTT
TGGAGCCTGTTCGGTGCTGCTGGCTCTGCTGGTGGCCTTGTTTATCCCGGAACACACCAACCTAAGCCTGCGGGCCAGCA
GCTGGAGGAAGCACTGTGGCGGCCATAGCCACCCTCATAGCACACAGGCGCCAGGAGTTGCCAAAGAACCCTTACTCCAG
GACACAAACGTG

Alignment

ORF - retro_mluc_718 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.83 %
• Parental protein coverage: 98.72 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  PQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLIQGVKGLLSFLSAPLIGALSDV
          PQGIGSPSVYHAVI.IFLEFFAWGLLTAPTLV.LHETFPKHTFLMNGLIQGVKGLLSFLSAPLIGALSDV
Retrocopy PQGIGSPSVYHAVIIIFLEFFAWGLLTAPTLVMLHETFPKHTFLMNGLIQGVKGLLSFLSAPLIGALSDV

Parental  WGRKSFLLLTVFFTCAPIPLMKISPWWYFAVISVSGVFAVTFSVVFAYVADITQEHERSMAYGQVSATFA
          WGRKSFLLLTVFFTCAPIPLM.ISPWWYFAVISVSGVFAVTFSVVFAYVADITQEHERSMAYGQVSATFA
Retrocopy WGRKSFLLLTVFFTCAPIPLMMISPWWYFAVISVSGVFAVTFSVVFAYVADITQEHERSMAYGQVSATFA

Parental  ASLVISPAIGAYLGRVYGDSLVVVLATAIALLDICFILVAVPESLPEKMRPASWGAPISWEQADPFASLK
          ASLVISPAIGAYLG.VYGDSLVVVLATAIALLDICFILVAVPE....KMRP.SWGAP.SWEQA.PFASLK
Retrocopy ASLVISPAIGAYLGQVYGDSLVVVLATAIALLDICFILVAVPE----KMRPVSWGAPNSWEQANPFASLK

Parental  KVGQDSIVLLICITVFLSYLPEAGQYSSFFLYLRQIMKFSPESVAAFIAVLGILSIIAQTIVLSLLMRSI
          KVGQDSI.LLICITVFLSYLPEAGQYSSFFLYLRQIMKFSPESVAAFIAVLGILSIIAQTIVLSLLMRSI
Retrocopy KVGQDSIMLLICITVFLSYLPEAGQYSSFFLYLRQIMKFSPESVAAFIAVLGILSIIAQTIVLSLLMRSI

Parental  GNKNTILL-GLGFQILQLA-WYGFGSEPWMMWAAGAVAAMSSITFPAVSALVSRTADADQQGVVQGMITG
          GNKNTILL.GLGFQILQLA..YGF.SEPWMMWAA.A.AAMSSIT.PA.S.LVSRTADADQQGVVQGMITG
Retrocopy GNKNTILL<GLGFQILQLA<MYGFCSEPWMMWAAVAMAAMSSITLPAISELVSRTADADQQGVVQGMITG

Parental  IRGLCNGLGPALYGFIFYIFHVELKELPMTGTDLGTNTSPQHHFEQNSIIPGPPFLFGACSVLLALLVAL
          IRGLCNGLGPALYGFIFY.FHVELKELPMTGTDLGTNTSPQHHFEQNSIIPGPPFLFGACSVLLALLVAL
Retrocopy IRGLCNGLGPALYGFIFYLFHVELKELPMTGTDLGTNTSPQHHFEQNSIIPGPPFLFGACSVLLALLVAL

Parental  FIPEHTNLSLRSSSWRKHCGGHSHPHSTQAPGEAKEPLLQDTNV
          FIPEHTNLSLR.SSWRKHCGGHSHPHSTQAPG.AKEPLLQDTNV
Retrocopy FIPEHTNLSLRASSWRKHCGGHSHPHSTQAPGVAKEPLLQDTNV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_718 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000010468	1 retrocopy	retro_chof_2174,
Echinops telfairi	ENSETEG00000005809	1 retrocopy	retro_etel_2047,
Myotis lucifugus	ENSMLUG00000002112	1 retrocopy	retro_mluc_718 ,
Oryctolagus cuniculus	ENSOCUG00000007819	1 retrocopy	retro_ocun_1386,
Drosophila melanogaster	FBgn0035400	1 retrocopy	retro_dmel_13,