RetrogeneDB ID: retro_mluc_717

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429772:18343563..18344240(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TXNDC9
• Ensembl ID: ENSMLUG00000008110
• Aliases: None
• Description: None

Sequence

>retro_mluc_717
AGAATGGAAGCGAATGCATCTGTTGAGATGTTTTTAAAAGTCCTGGAGAACCAGTTGCTTCAGACTACCAAACTAGTGGA
AGAACATTTGGATGCTGAAATTCAGAAACTGGATCAGATGGATGAGGATGAATTGGAACACCTCAAAGAAAAGAGATTTG
AGGCACTAAGAAAAGCTCAACAGCAGAAACAAGAATGACTTTCAAAAAGGACCTGGGGACTACAGAGAAATCCCCAGCAA
GAGAGACTTTTTTCAAGAAGTCAGAGAGAGTAAAAAAGTGGGTTGCCATTTCTACAGAGACTCCACATTCAGGTGTAAAA
TGCTAGACATTCACTTGGTAATATTGTCCAAGAAACGTCTGGAGACCACATTTTTGAAGCTGAATGTAGAAAAGCACCTT
TCCTTTTTTTGAGACTGAGGATCAAAATCATTCCCACACTGGCACTGGTAAAAGATGGAAAAACACAAGATTATGTTGCT
TGACTTATTGGCCTAGAAAATACAGATGACTTCACCACAGAAACTTTAGAATGGAGGCTTGGTTGTTCTGATATTCTTAA
TTACGATGGGAATTTAATGGAGCTACCATTTCAGAGCCAAAAGAAATTTGGAACAGACTTCCCAAAGCTGGAAAAGAAAA
CTATCAAGGAAAGAAATATGATTTGGACTCTGATGAT

Alignment

ORF - retro_mluc_717 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.22 %
• Parental protein coverage: 99.56 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  RMEAHSSVDMFSKVLENQLLQTTKLVEERLDAEIQKMDQMDEDELELLKEKRLKALKKTQQQKQEWLSK-
          RMEA..SV.MF.KVLENQLLQTTKLVEE.LDAEIQK.DQMDEDELE.LKEKR..AL.K.QQQKQE.LSK.
Retrocopy RMEANASVEMFLKVLENQLLQTTKLVEEHLDAEIQKLDQMDEDELEHLKEKRFEALRKAQQQKQE*LSK>

Parental  GHGEYREIPSERDFFQEVKESKNVVCHFYRDSTFRCKILDKHLAILSKKHLETKFLKLNVE-KAPFLCER
          G.G.YREIPS.RDFFQEV.ESK.V.CHFYRDSTFRCK.LD.HL.ILSKK.LET.FLKLNVE.KAPFL..R
Retrocopy GPGDYREIPSKRDFFQEVRESKKVGCHFYRDSTFRCKMLDIHLVILSKKRLETTFLKLNVE<KAPFLFLR

Parental  LKIKVIPTLALVKDGKTQDYVAGFTDLGNTDDFTTETLEWRLGCSDIINYSGNLMEPPFQSQKKIGTNFT
          L.IK.IPTLALVKDGKTQDYVA....L.NTDDFTTETLEWRLGCSDI.NY.GNLME.PFQSQKK.GT.F.
Retrocopy LRIKIIPTLALVKDGKTQDYVA*LIGLENTDDFTTETLEWRLGCSDILNYDGNLMELPFQSQKKFGTDFP

Parental  KLEKKTIR-GKKYDSDSDD
          KLEKKTI..GKKYD.DSDD
Retrocopy KLEKKTIK<GKKYDLDSDD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_717 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000009936	1 retrocopy	retro_cjac_500,
Dipodomys ordii	ENSDORG00000013557	1 retrocopy	retro_dord_141,
Homo sapiens	ENSG00000115514	1 retrocopy	retro_hsap_3042,
Gorilla gorilla	ENSGGOG00000024615	1 retrocopy	retro_ggor_2096,
Myotis lucifugus	ENSMLUG00000008110	1 retrocopy	retro_mluc_717 ,
Mus musculus	ENSMUSG00000058407	2 retrocopies	retro_mmus_2791, retro_mmus_873,
Pan troglodytes	ENSPTRG00000012278	1 retrocopy	retro_ptro_1996,