RetrogeneDB ID: retro_mluc_71

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430087:931519..932608(-)
• Located in intron of: ENSMLUG00000024254

Retrocopy information

• Ensembl ID: ENSMLUG00000029636
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000015087
• Aliases: None
• Description: None

Sequence

>retro_mluc_71
ATGGAGAACCAGGTGCTGACGCCGCACGTCTACTGGGCTCAGCGGCACCGCGAGCTGTACTTGCGCGTGGAGCTGAGTGA
CGTGCAGAATCCTGCCATCAGCATCGCTGAAAATGTACTGCATTTCAAAGCTCAAGGACATGGTGCCAAAGGAGATAATG
TCTACGAGTTTCACCTGGAGTTCTTGGACCTTGTGAAGCCAGAGCCGGTTTACAAACTGACGCAGAGGCAGGTCAACATT
ACGGTGCAGAAGAAGGTGAGCCAGTGGTGGGAGAGACTCACCAAGCAGGAGAAGCGCCCACTGTTTTTGGCCCCTGACTT
TGATCGCTGGCTGGACGAGTCTGATGCGGAAATGGAGCTCCGAGCCAAGGAAGAAGAACGCCTAAATAAACTCAGAATGG
AAAGCCAAGGCTCCCCTGAAACTCTTATAAACTTGAAGAAAGGATACCTGTTCATGTATAATCTTGTGCAGTTCTTGGGA
TTCTCGTGGATGTTTGTCAACATGACTGTGCGGTTCTTTATCCTGGGAAAAGAGTCCTTCTATGACACATTTCACACCAT
AGCTGACATGATGTATTTCTGCCAGATGTTGGCAGTTGTGGAGTCTATCAATGCAGCAATTGGAGTCACTAAGTCACCAG
TGATACCTTCTGTTATCCAGCTTTTTGGAAGAAATTTCATTTTGTTTATCATCTTTGGCACTATGGAAGAAATGCAAAGC
GCAGCCGTGGTTTTCTTTGTGTTTTATATGTGGAGCACAATTGAAATTTTCAGGTACCCCTACTACATGCTTTGCTGCAT
TGACATGGATTGGAAAGTGCTCACATGGCTTCGTTACACTGTGTGGATTCCGTTATATCCCCTGGGATGTTTGGCAGAAG
CTGTCTCAGTGATCCAGTCCATCCCCGTGTTCAATGAAACAGGGAGATTCAGCTTCACATTGCCATATCCCATGGAAATC
CATGTTAGATTTTCCTTTTTTCTTCAGGTTTATCTTATAATGCTATTTTTAGGGTTATACATAAATTTCCGTCACCTTTA
TAAACAGCGCAGGCGGCACTATGGACAAAAAAAGAAGAAAATCCACTGA

Alignment

ORF - retro_mluc_71 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.17 %
• Parental protein coverage: 99.45 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MENQVLTPHVYWAQRHRELYLRVELSDVQNPAISIAENVLHFKAQGHGAKGDNVYEFHLEFLDLVKPEPV
          MENQVLTPHVYWAQRHRELYLRVELSDVQNPAISIAENVLHFKAQGHGAKGDNVYEFHLEFLDLVKPEPV
Retrocopy MENQVLTPHVYWAQRHRELYLRVELSDVQNPAISIAENVLHFKAQGHGAKGDNVYEFHLEFLDLVKPEPV

Parental  YKLTQRQVNITVQKKVSQWWERLTKQEKRPLFLAPDFDRWLDESDAEMELRAKEEERLNKLRMESQGSPE
          YKLTQRQVNITVQKKVSQWWERLTKQEKRPLFLAPDFDRWLDESDAEMELRAKEEERLNKLRMESQGSPE
Retrocopy YKLTQRQVNITVQKKVSQWWERLTKQEKRPLFLAPDFDRWLDESDAEMELRAKEEERLNKLRMESQGSPE

Parental  TLINLKKGYLFMYNLVQFLGFSWMFVNMTVRFFILGKESFYDTFHTIADMMYFCQMLAVVESINAAIGVT
          TLINLKKGYLFMYNLVQFLGFSWMFVNMTVRFFILGKESFYDTFHTIADMMYFCQMLAVVESINAAIGVT
Retrocopy TLINLKKGYLFMYNLVQFLGFSWMFVNMTVRFFILGKESFYDTFHTIADMMYFCQMLAVVESINAAIGVT

Parental  KSPVIPSVIQLFGRNFILFIIFGTMEEMQNKAVVFFVFYMWSTIEIFSRYPYYMLCCIDMDWKVLTWLRY
          KSPVIPSVIQLFGRNFILFIIFGTMEEMQ..AVVFFVFYMWSTIEIF.RYPYYMLCCIDMDWKVLTWLRY
Retrocopy KSPVIPSVIQLFGRNFILFIIFGTMEEMQSAAVVFFVFYMWSTIEIF-RYPYYMLCCIDMDWKVLTWLRY

Parental  TVWIPLYPLGCLAEAVSVIQSIPVFNETGRFSFTLPYPMEIHVRFSFFLQVYLIMLFLGLYINFRHLYKQ
          TVWIPLYPLGCLAEAVSVIQSIPVFNETGRFSFTLPYPMEIHVRFSFFLQVYLIMLFLGLYINFRHLYKQ
Retrocopy TVWIPLYPLGCLAEAVSVIQSIPVFNETGRFSFTLPYPMEIHVRFSFFLQVYLIMLFLGLYINFRHLYKQ

Parental  RRRHYGQKKKKIH
          RRRHYGQKKKKIH
Retrocopy RRRHYGQKKKKIH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_71 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000001687	2 retrocopies	retro_dnov_352, retro_dnov_54,
Myotis lucifugus	ENSMLUG00000015087	1 retrocopy	retro_mluc_71 ,