RetrogeneDB ID: retro_mluc_695

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429771:9957057..9957686(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SUCLG2
• Ensembl ID: ENSMLUG00000017294
• Aliases: None
• Description: None

Sequence

>retro_mluc_695
TACTTTGCAATAACAATGGAAAGGTCATTTCAAGGTCCTGTATTAATAGGAAGTTCTCAAGGTGGTGTCAACATTGAAGA
TGTTCCTGCAGAGACTCCTGAAGCCATAGTTAAAGAACCTATTGATATTGTAGAAAGCATCAAAAAGGAACCAGCTTACC
GGCTTGCACAGAAGATGGGATTTGCACCTAATGTTGTGGATTCTGCAGCAGAAAACATGGTCCAGCTTTACAACCTTTTT
CTGAAATATGATGCAACCATGGTAGAAATAAATCCTATGGTAGAGGATTCAGATGAGCTGTGCTGTGTATGGATGCGAAG
ATCAATTTTGATTCTAATTAAGCTTATCGCCAGAAGAAAATATTTGATCTCCAGGACTGGACTCAGGAAGATGAAAGGGA
CAAAGATGCAGCTAAGGCAGATATCAACTACATCGGCCTAGATGGGAATATAGGCTGTCTAGTAAATGGTGCTGGTTTGG
CTATGGCCACAATGGATATAATAAAACTTCATGGAGGGACTCCAGCCAACTTTCTTGATGTTGGTGGTGGTGCCACAGTC
CATCAAGTAACAAAACCATTTAAGCTTATCACTTCAGACAAAAAGGTACCAGCTATTCTGGTCAACATT

Alignment

ORF - retro_mluc_695 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 54.98 %
• Parental protein coverage: 71.92 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  YFAILMDRSCNGPVLVGSPQGGMDIEEVAASSPELIFKEQIDIMEGIKDSQAQRMAENLGFLGPLKNQAA
          YFAI.M.RS..GPVL.GS.QGG..IE.V.A..PE.I.KE.IDI.E.IK...A.R.A...GF.......AA
Retrocopy YFAITMERSFQGPVLIGSSQGGVNIEDVPAETPEAIVKEPIDIVESIKKEPAYRLAQKMGFAPNVVDSAA

Parental  DEIKKLYHLFLKIDATQVEVNPFGETPEG-QVVCFDAKINFDDNAEFRQKDIFAMDDGSENEPIENEAAK
          .....LY.LFLK.DAT.VE.NP..E......V.C.DAKINFD.N...RQK.IF...D..........AAK
Retrocopy ENMVQLYNLFLKYDATMVEINPMVEDSDE<AVLCMDAKINFDSN*AYRQKKIFDLQDWTQEDERDKDAAK

Parental  YDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVQEAQVYQAFKLLTADPKVTLSWVE
          .D..YIGLDGNI.C.VNGAGLAMAT.DII.L.GG.PANFLD.GGG....QV...FKL.T.D.KV....V.
Retrocopy ADINYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTKPFKLITSDKKVPAILVN

Parental  V
          .
Retrocopy I

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_695 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000172340	1 retrocopy	retro_hsap_1044,
Gorilla gorilla	ENSGGOG00000027438	1 retrocopy	retro_ggor_825,
Myotis lucifugus	ENSMLUG00000017294	1 retrocopy	retro_mluc_695 ,
Macaca mulatta	ENSMMUG00000009693	2 retrocopies	retro_mmul_1273, retro_mmul_1995,
Mus musculus	ENSMUSG00000061838	1 retrocopy	retro_mmus_3720,
Nomascus leucogenys	ENSNLEG00000007553	1 retrocopy	retro_nleu_915,
Otolemur garnettii	ENSOGAG00000006190	1 retrocopy	retro_ogar_161,
Pongo abelii	ENSPPYG00000013735	1 retrocopy	retro_pabe_2624,
Pteropus vampyrus	ENSPVAG00000004554	1 retrocopy	retro_pvam_912,