RetrogeneDB ID: retro_mluc_690

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429771:6939521..6940490(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SHOC2
• Ensembl ID: ENSMLUG00000013811
• Aliases: None
• Description: None

Sequence

>retro_mluc_690
AAAAACCTGTCAAAAACTCAGCATACTTAACTTTTGAGGGGGGACAAAAGCAAACAACTACCTGCTGAAATGGTGAATTA
TGTAACTTCATTATGCTGGATGTAGCTCACAATTAACTTGAACATCTTCCAAAGGAGATTGGAAACTGCACACAGATAAC
AACCTTGACTTGTAGCACAATGAACTGCTAGACCTCCCAGATACTATAGGAAACCTGTCCAGTTTAAGTCATATTGGTCT
GAGATGTAACCAACTCTCAGCAATACCCAGATCACTGACAAAATGCAGTGCACTTGAAGAATTCAATTTAGATAACAATA
ACATTTCTACTTTACCAGAGAGCCTTTTATCAAGTCTTGTGAAACTGAATAGTTTGACCTTAGCTAGAAATTGCTTCCAG
TTATATTCAGTAGGTGGTCCATCTCAGTTTTCCCTCAACATGGACAATTGGATCAATAAAATTCCATTTAGAATTTTCTC
CAGAGCAAAAGTGTTAAGTAAGCTGAATATGAAGGACAATCAGTTGACATCACTTCCCTTGGATTTTGGAACTTGGACCA
GTATGGTAGAATTGAATTTAGCCACTAATCAGCTCACAAAGATCCCTGAGGATGTGTCTGGTCTTGTTTCTCTTGAGGTT
CTGATATTATCAAACAGTCTTCTAAAGAAGCTTCCCCATGGTCTTGAAAACCTTAGGAAGTTAAGAGAACTGGGTCTAGA
AGAGAACAAATTGGAATCCTTGCCAAATGAAATGGCTTAATTTAAGGATTTACAGAAATTGGTCTTGACAACAACCAGTT
GACCACTCTTCCCAGAAGCATTGGTCACCTTACCAATCTCACACATCTAGGCCTTGGAGAGAACTTACTTACTCATCTTC
CTGAGGAAATTGGTACATTGGAGAACCTAGAACAGGGGTGGGCAACCCCTGGCCCACGTGCCAAACATGGCACACCAGTA
ACTTTTGCT

Alignment

ORF - retro_mluc_690 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.83 %
• Parental protein coverage: 56.19 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  KNLSKLSML-SIRENKIKQLPAEI-GELCNLITLDVAHNQLEHLPKEIGNCTQIT-NLDLQHNELLDLPD
          KNLSK.......R..K.KQLPAE..GELCN.I.LDVAHN.LEHLPKEIGNCTQIT.NLDL.HNELLDLPD
Retrocopy KNLSKTQHT*LLRGDKSKQLPAEM<GELCNFIMLDVAHN*LEHLPKEIGNCTQIT<NLDL*HNELLDLPD

Parental  TIGNLSSLSRLGLRYNRLSAIPRSLAKCSALEELNLENNNISTLPESLLSSLVKLNSLTLARNCFQLYPV
          TIGNLSSLS..GLR.N.LSAIPRSL.KCSALEE.NL.NNNISTLPESLLSSLVKLNSLTLARNCFQLY.V
Retrocopy TIGNLSSLSHIGLRCNQLSAIPRSLTKCSALEEFNLDNNNISTLPESLLSSLVKLNSLTLARNCFQLYSV

Parental  GGPSQFSTIYSLNMEHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIP
          GGPSQ.....SLNM..N.INKIPF.IFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIP
Retrocopy GGPSQ----FSLNMD-NWINKIPFRIFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIP

Parental  EDVSGLVSLEVLILSNNLLKKLPHGLGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLT-NNQLTTLP
          EDVSGLVSLEVLILSN.LLKKLPHGL.NLRKLREL.LEENKLESLPNE.A..KDLQKLVLT.NNQLTTLP
Retrocopy EDVSGLVSLEVLILSNSLLKKLPHGLENLRKLRELGLEENKLESLPNEMA*FKDLQKLVLT<NNQLTTLP

Parental  RGIGHLTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNL-HSLPFELA
          R.IGHLTNLTHLGLGENLLTHLPEEIGTLENLE.......P...H..P...A
Retrocopy RSIGHLTNLTHLGLGENLLTHLPEEIGTLENLEQGWATPGPRAKHGTPVTFA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_690 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000013811	1 retrocopy	retro_mluc_690 ,
Oryctolagus cuniculus	ENSOCUG00000014348	1 retrocopy	retro_ocun_1369,
Pongo abelii	ENSPPYG00000002651	1 retrocopy	retro_pabe_252,