RetrogeneDB ID: retro_mluc_684

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429771:18852602..18853597(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: AMMECR1L
• Ensembl ID: ENSMLUG00000006871
• Aliases: None
• Description: None

Sequence

>retro_mluc_684
TTCCCTGGCAATACAAACTTCCTGCTTCAGGTTCTGTAGATTCCAGACCACGAGCACTGAGTCAGGATGGGAAAAAGACT
CTGCATTCCTCCACTCGAGCCCAAGTTAGCAGCAGGCTGTTGTGGGGTCAAGAAGCCCAAGTTATCTGGAAGTGGAATGC
ACTCTCACAGGAACCAGTCCACCACTGTCCCTGGCTCTAGTTCAGGACCTCTTCAAAACCACCAGCATGTGGATGGCAGC
AGTGGTCGGGAGAATGTGTCAGACTTAACTCTGGGACCTGGAAACTCTTCCATTATACAAATGAATCCCGTATCAGGAGC
TCTGAGTCCTCTTCCCCGACCCAATGGAACTGCCAACACCACCAAGAATCTGGTGGTGACCGCAGAGATGTGCTGCTACT
GCTTTGGTGTCCTCTACTGTCACCTCTATGGCTTCCCTCAGCCATGACTTCCTAGATTCACCAATGGCCCCTATCCGCTC
TTTGTGACATGGAAGACAGGGCAGGACAAGTGGCTTCGTGGCTGCATTGGGACCTTCTCAGCCATGAATCTTCATCCAAG
ACTCAGGGAATACACGTTAACCAGTGCACTTAAGGACAGTCGATTTCCCCCCTGACCAGAGAGGAGCTGCCTAAATTTTC
CTGCTCTGTCTCCCTCCTTACTAACTTTGAGGATGCCAGTGATTACCAGGACTGGGAGGTAGGGGTCCATGGGATTCAAA
TTGAATTCATCAATGAAAAAGGTGTCAAATGTACAGCCACATATTTACCTGAGGTTGCTAAGGAGCAAGACTGGGATCAG
ATCCAGACAATAGACTCCTTGCTCAAGAAAGGTGGCTTTAAGGCTCCAATTACCAGTGAATTCAGAAAAATGATTATACT
CACCAGGTACCGAAGTGAGAAAGTGACAATCAGTTATGCAGAATATATTGCTTCTCAACAGCACTGTTTCCAGAATGGCA
CTCTTCATGCCCTGCCCCTCTACAATCATTATTCC

Alignment

ORF - retro_mluc_684 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.39 %
• Parental protein coverage: 90.96 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  FPLHFEFIRWLVCIPYAGHQIRMGKRRCVPPLEPKLAAGCCGVKKPKLSGSGTHTHGNQSTTVPGSSSGP
          FP....F......IP...H..RMGKR.C.PPLEPKLAAGCCGVKKPKLSGSG.H.H.NQSTTVPGSSSGP
Retrocopy FPGNTNFLLQVL*IPDHEH*VRMGKRLCIPPLEPKLAAGCCGVKKPKLSGSGMHSHRNQSTTVPGSSSGP

Parental  LQNHQHADGSSGRENVSDLTLGPGNSPITRMNPASGALSPLPRPNGTANTTKNLVVTAEMCCYCFDVLYC
          LQNHQH.DGSSGRENVSDLTLGPGNS.I..MNP.SGALSPLPRPNGTANTTKNLVVTAEMCCYCF.VLYC
Retrocopy LQNHQHVDGSSGRENVSDLTLGPGNSSIIQMNPVSGALSPLPRPNGTANTTKNLVVTAEMCCYCFGVLYC

Parental  HLYGFPQPRLPRFTNDPYPLFVTWKTGRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFP-PLTREE
          HLYGFPQP.LPRFTN.PYPLFVTWKTG.DK.LRGCIGTFSAMNLH..LREYTLTSALKDSRFP.PLTREE
Retrocopy HLYGFPQP*LPRFTNGPYPLFVTWKTGQDKWLRGCIGTFSAMNLHPRLREYTLTSALKDSRFP<PLTREE

Parental  LPKLSCSVSLLTNFEDASDYLDWEVGVHGIRIEFINEKGVKRTATYLPEVAKEQDWDQIQTIDSLLRKGG
          LPK.SCSVSLLTNFEDASDY.DWEVGVHGI.IEFINEKGVK.TATYLPEVAKEQDWDQIQTIDSLL.KGG
Retrocopy LPKFSCSVSLLTNFEDASDYQDWEVGVHGIQIEFINEKGVKCTATYLPEVAKEQDWDQIQTIDSLLKKGG

Parental  FKAPITSEFRKTIRLTRYRSEKVTISYAEYIASRQHCFQNGTLHAPPLYNHYS
          FKAPITSEFRK.I.LTRYRSEKVTISYAEYIAS.QHCFQNGTLHA.PLYNHYS
Retrocopy FKAPITSEFRKMIILTRYRSEKVTISYAEYIASQQHCFQNGTLHALPLYNHYS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_684 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000009373	1 retrocopy	retro_chof_1566,
Callithrix jacchus	ENSCJAG00000010743	1 retrocopy	retro_cjac_383,
Equus caballus	ENSECAG00000023095	1 retrocopy	retro_ecab_1085,
Echinops telfairi	ENSETEG00000000510	1 retrocopy	retro_etel_9,
Homo sapiens	ENSG00000144233	1 retrocopy	retro_hsap_1227,
Gorilla gorilla	ENSGGOG00000014448	1 retrocopy	retro_ggor_961,
Myotis lucifugus	ENSMLUG00000006871	1 retrocopy	retro_mluc_684 ,
Macaca mulatta	ENSMMUG00000001987	1 retrocopy	retro_mmul_1302,
Mus musculus	ENSMUSG00000041915	2 retrocopies	retro_mmus_1330, retro_mmus_352,
Nomascus leucogenys	ENSNLEG00000015793	1 retrocopy	retro_nleu_700,
Pan troglodytes	ENSPTRG00000012437	1 retrocopy	retro_ptro_843,
Sarcophilus harrisii	ENSSHAG00000014762	1 retrocopy	retro_shar_86,