RetrogeneDB ID: retro_mluc_683

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429771:18421277..18421949(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ACTR10
• Ensembl ID: ENSMLUG00000007553
• Aliases: None
• Description: None

Sequence

>retro_mluc_683
GCTGGCATGCCTAAGCCTATCAAAGTTGTTCAATATAATATCAATACAGAAGAATTATATTTCTACCTAAAGGAATTTAT
CCACATACTGTATTTCAGACATCTGTTGGTGAATCCCAGAGATCGCCGAGTCGTGGTTATTGAATCAGTACTATGTCCTT
CCCACTTCAGAGAGACACTCACTCACGTTCTCTTCAAGTATTTTGAGGTTCTGTCTGTCTTGCTTGCTCCAAGCCATCTA
ATGGCTCTTCTGATACTTGGGATAAACTCTGCTATGGTCCTGGATTGTGGATATAGAGAAAGCCTGGTGTTACCTATATA
TGAAGGAATCCCAATACTAAATTGCTGGGGAGCACTCCTCCTAGGAGGAAAAGCTCTGCACAGGGAGTTGGAAACTCAAC
TATTGGAGCAATGTACTGTTGACAGAGGTGCTGCTAAAAAACAGAGCCTTCCCTCTGTGATGGGTTCAGTTCCAGAAGGT
GTCTTAGAGGACATTAAAGTGCGCACTTGCTTTGTAAGTGATCTGAAATGTGGACTAAAAATCCAAGCAGCAAAATTTAA
TATCGATGGGAATACTGAGCGTCCCTCACCACCCGCAAATGTTGACTACCCATTAGATGGAGAGAAGATTTTACATGTCC
TTGGATCAATCAGGGATTCGGTTGTGGAAATT

Alignment

ORF - retro_mluc_683 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.09 %
• Parental protein coverage: 53.72 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  AGMPKPIKVVQYNINTEELYSYLKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEV
          AGMPKPIKVVQYNINTEELY.YLKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLT.VLFKYFEV
Retrocopy AGMPKPIKVVQYNINTEELYFYLKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTHVLFKYFEV

Parental  PSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHRELETQLLEQCTV
          .SVLLAPSHLMALL.LGINSAMVLDCGYRESLVLPIYEGIP.LNCWGAL.LGGKALHRELETQLLEQCTV
Retrocopy LSVLLAPSHLMALLILGINSAMVLDCGYRESLVLPIYEGIPILNCWGALLLGGKALHRELETQLLEQCTV

Parental  DTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVSDLKRGLKIQAAKFNIDGNTERPSPPPNVDYPLDGEKI
          D.GAAK.QSLPSVMGS.PEGVLEDIKVRTCFVSDLK.GLKIQAAKFNIDGNTERPSPP.NVDYPLDGEKI
Retrocopy DRGAAKKQSLPSVMGSVPEGVLEDIKVRTCFVSDLKCGLKIQAAKFNIDGNTERPSPPANVDYPLDGEKI

Parental  LHVLGSIRDSVVEI
          LHVLGSIRDSVVEI
Retrocopy LHVLGSIRDSVVEI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_683 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000011261	1 retrocopy	retro_dnov_1440,
Myotis lucifugus	ENSMLUG00000007553	1 retrocopy	retro_mluc_683 ,
Otolemur garnettii	ENSOGAG00000000380	1 retrocopy	retro_ogar_149,
Tursiops truncatus	ENSTTRG00000013521	1 retrocopy	retro_ttru_1718,