RetrogeneDB ID: retro_mluc_65

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429777:9193262..9194498(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000012233
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: EIF4A3
• Ensembl ID: ENSMLUG00000009585
• Aliases: None
• Description: None

Sequence

>retro_mluc_65
CTGGCGGCCACCTCCACCATGGCGAACTACGGGACGGCGCGGAAGTGGCTGCTCAGAGAGGCAGACATGACCAAAGTGGA
ATTCGAGACCAGCGAGGAAGTGGACGTGACGCCCACGTTCGACACCATGGGCCTGCGGGAGGACCTGCTGCGCGGCATCT
ACGCCTTCGGGTTTGAAAAGCCGTCCGCCATCCAGCAGCGCGCCATCCGGCAGATCATTAGAGGGAGAGATGTCATCGCG
CAGGCTCAGTCTGGCACGGGCAAGACCGCCACCTTGAGCATTTCCGTCCTGCAGTGTCTGGACAGCCAGGTCCGTGAGAC
CCAGGCTCTGATCTTGGCCCCCACGAGAGAGCTGGCCGTGCAGATCCAGAAGGGCCTGCTCGCGCTGGGCGACTACATGA
AGGTGCAGTGTCACGCCTGCATCGGGGGCACCCAGGTCGGGGAGGACATCTGGAGGCTGGACCACGGGCAGCACGTGGTG
GCCGGCACGCCGGGGCGTGTCTTCGATATGATTCGGCGCAAGAGTCTGAGGACACGTGCGATCAAGATGTTGGTGTTGGA
TGAGGCTGATGAGATGCTGAATCAAGGTTTCAAAGAGCAGATTTACGACGTGTACCGGTACCTGCCCCCGGCCACGCAGG
TGGTGCTCCTCAGCGCCACGCTGCCCCACGAGATCCTGGAGATGACCAGCAAGTTCATGACGGACCCCATCCGCATCCTG
GTGAAGCGTGATGAGCTGACGCTGGAAGGCATCAAGCAGTTTTTCGTGGCGGTGGAAAGAGAAGAGTGGAAATTTGACAC
GCTGTGTGACCTCTACGACACGCTGACCATCACGCAAGCCGTCATCTTCTGCAACACCAAGAGGAAGGTGGACTGGCTGA
CGGAGAAAATGAGAGAAGCCAACTTCACGGTGTCGTCGATGCACGGAGACATGCCGCAGAAGGAGCGGGAGTCCATCATG
AAGGAGTTCCGGTCCGGCGCCAGCCGGGTGCTCATCTCCACCGACGTCTGGGCCCGGGGCCTGGACGTCCCTCAGGTGTC
CCTGGTCATCAACTACGACCTGCCCAACAGCCGGGAGCTCTACATCCACAGGATCGGGCGGTCGGGGCGGTATGGCCGGA
AGGGCGTGGCCATCAACTTCGTGAAGGACGACGACGTCCGCATCCTGCGGGACATTGAGCAGTACTACGCCACGCAGATC
GACGAGATGCCCGTGAACGTTGCCGATCTGATGTGA

Alignment

ORF - retro_mluc_65 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.01 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SIQIILKGECLLLGSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQC
          .I..I..G.......QSGTGKTAT.SISVLQCLD.QVRETQALILAPTRELAVQIQKGLLALGDYM.VQC
Retrocopy AIRQIIRGRDVIAQAQSGTGKTATLSISVLQCLDSQVRETQALILAPTRELAVQIQKGLLALGDYMKVQC

Parental  HACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRY
          HACIGGT.VGEDI..LD.GQHVVAGTPGRVFDMIRR.SLRTRAIKMLVLDEADEMLN.GFKEQIYDVYRY
Retrocopy HACIGGTQVGEDIWRLDHGQHVVAGTPGRVFDMIRRKSLRTRAIKMLVLDEADEMLNQGFKEQIYDVYRY

Parental  LPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI
          LPPATQVVL.SATLPHEILEMT.KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI
Retrocopy LPPATQVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI

Parental  TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASSRVLISTDVWARGLDVPQV
          TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGAS.RVLISTDVWARGLDVPQV
Retrocopy TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGAS-RVLISTDVWARGLDVPQV

Parental  SLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
          SL.INYDLPN.RELYIHRIGRSGRYGRKGVAINFVK.DD.RILRDIEQYY.TQIDEMP.NVADL.
Retrocopy SLVINYDLPNSRELYIHRIGRSGRYGRKGVAINFVKDDDVRILRDIEQYYATQIDEMPVNVADLM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_65 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 8 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000009136	2 retrocopies	retro_mmur_444, retro_mmur_50,
Myotis lucifugus	ENSMLUG00000003415	3 retrocopies	retro_mluc_1047, retro_mluc_1229, retro_mluc_1805,
Myotis lucifugus	ENSMLUG00000009585	1 retrocopy	retro_mluc_65 ,
Macaca mulatta	ENSMMUG00000009590	1 retrocopy	retro_mmul_851,
Monodelphis domestica	ENSMODG00000002190	1 retrocopy	retro_mdom_202,
Mus musculus	ENSMUSG00000025580	2 retrocopies	retro_mmus_2752, retro_mmus_70,
Ornithorhynchus anatinus	ENSOANG00000000334	1 retrocopy	retro_oana_47,
Otolemur garnettii	ENSOGAG00000007495	1 retrocopy	retro_ogar_212,