RetrogeneDB ID: retro_mluc_63

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429805:808593..810348(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000013479
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000001410
• Aliases: None
• Description: None

Sequence

>retro_mluc_63
ATGTTTTCTAAGGCCTTTCGGGTCAAGTCCAACACGGCCATCAAGGGATCGGACAGGAGAAAGCTTCGAGCTGACGTGGC
AGCTGCTTTCCCCGCCCTGGGGACCGACCAGGCCTCGGAGTTGGTGCCTGGGAAGGAAGAGCTCAGCATCGTGAAGCTGT
ATGCTCACAGAGGGGATGCCGTGACTGTGTACGTGAGTGGTGGTAACCCCGTCCTATTTGAACTGGAGAAAAATCTGTAC
CCGACAGTGTACACCCTGTGGTCCTATCCTGATCTTCTACCAGCATTCACAACATGGCCTCTGGTGCTCGAAAAACTGGT
GCGGGGAGCAGATTTGATGCTGCCGGGAATAGTGGTGCCCCCTGCTGGTCTGCCTCAGGTACAGAAGGGTGACCTCTGTG
CCATTGTCTTGGTGGGAAACAGGGCCCCCGTGGCCATCGGAGTGGCTGCCATGTCCACATCTGAGATGCTGACTTCAGGC
CTGAAGGGAAGGGGCTTCTCTGTGCTCCACACCTACAAGGACCACTTGTGGCGATCTGGAGACAAATCCTCTCCACCTTT
CATTGCCCCACTGACCCTGGATGCCTCAGATGTCAGTGAAGAGAAGGGGTCTGTCCAGGCAGGCCCCACCCTGCAGGATG
ACATGAGGCGCCTTACCCTGGAGAGAAAGGAGGAGGAGAATGGGGAAGATCAGCAGATGTGTGGGGAGAAGACCCTACCA
GAAGCCTCAGAAGACCCTGGCGTCAGGGGCCTGAACCCAGACCCCGCAGACAGCAAGACCCTTCAAGAGCAAATGGATGA
ACTGCTACAGCAATGCTTCTTGCATGCTTTGAAGTGCCGAGTCAAAAAGACCGACCTCCCTCTACTCACCAGCGCGTTCC
TCGGTAGCCATGTGTTCTCCTGCTGCCCTGAAGGACGGCAACTGGACATAAAGAAGTCAAGCTACAAAAAACTCTCTAAG
TTCCTGCAGCAAATGCAGCAGGAGCAGATTATACAGGTCAAGGAGCTGAGCAAAGGGGTGGAGAGCATTGTGGCTGTGGA
CTGGAAACACCCCAGGATCACATCTTTGGTCATACCTGAGCCCTCCCCGACCTCCCAAACTATCCAGGAGGATAGCAGGG
AACAGCCCTATCGCCCTCCAGATATAAAACCCCTCTACTGTGTCCCAGCCAGCATGAGCCTGCTCTTCCAGGAGTCTGGC
CACAAGAAGGGGAGCATTCTCGAGGGCAGTGAGGTCCGGATGGTCATCATTAACTATGCCAAGAAAAATGACCTGGTTGA
CGCAGACAACAAAAATCTCGTACACTTGGATCCCATCCTGTGTGACTGCATCTTAGAGAACAGTGAACAGCACATAGTCA
TGAAGCTTCCATGGGACAGTCTTCTGACCAGATGTTTGGGGAAACTGCAGCCTGCCTATCAAGTGACCTTTCCCGGACAA
GAGCCCATTGTGAAGAAAGGCAAAATCTGCCCCATTGACATCACCCTAGCACAGAGAGCTTCCAATAAAAAGGTGACTGT
GGTCCGGAATTTGGAGGCCTACGGTCTGGACCCATGCACAGTGGCTGCCACCCTGCAGCAGCGATGCCAGGCTAGCACCA
CTGTCACTCCTGCCCCTGGGGCTAAGGACAGCCTGCAGGTCCAGATCCAGGGAAACCAGGTCCACCTCGGCCGGCTGTTG
CTTGAAGAATATCAGCTTCCTCGGAAACACATCCAAGGCCTCGAAAAGGCCCCCAAGCCTGGCAAGAAGAAGTGA

Alignment

ORF - retro_mluc_63 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.9 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MFAKAFRVRSNTAIKGSDRRKLRADVTAAFPALGTDQASELVPGKEELSVVKLYAHRGDAVTVYVSGGNP
          MF.KAFRV.SNTAIKGSDRRKLRADV.AAFPALGTDQASELVPGKEELS.VKLYAHRGDAVTVYVSGGNP
Retrocopy MFSKAFRVKSNTAIKGSDRRKLRADVAAAFPALGTDQASELVPGKEELSIVKLYAHRGDAVTVYVSGGNP

Parental  VLFELEKNLYPTVYTLWSYPDLLPAFTTWPLVLEKLVGGADLMLPGIVVPPAGLPQVQKGDLCAIVLVGN
          VLFELEKNLYPTVYTLWSYPDLLPAFTTWPLVLEKLV.GADLMLPGIVVPPAGLPQVQKGDLCAIVLVGN
Retrocopy VLFELEKNLYPTVYTLWSYPDLLPAFTTWPLVLEKLVRGADLMLPGIVVPPAGLPQVQKGDLCAIVLVGN

Parental  RAPVAIGVAAMSTSEMLTSGLKGRGFSVLHTYEDHLWRSGDKSSPPFIAPLTLDPPDVSEEKGSVQAGPA
          RAPVAIGVAAMSTSEMLTSGLKGRGFSVLHTY.DHLWRSGDKSSPPFIAPLTLD..DVSEEKGSVQAGP.
Retrocopy RAPVAIGVAAMSTSEMLTSGLKGRGFSVLHTYKDHLWRSGDKSSPPFIAPLTLDASDVSEEKGSVQAGPT

Parental  LQDDMRRLTLEGKEEENGEDQQMCGEKTLPEASEDPGVGGLNPDPADSKTLQEQMDELLQQCFLHALKCR
          LQDDMRRLTLE.KEEENGEDQQMCGEKTLPEASEDPGV.GLNPDPADSKTLQEQMDELLQQCFLHALKCR
Retrocopy LQDDMRRLTLERKEEENGEDQQMCGEKTLPEASEDPGVRGLNPDPADSKTLQEQMDELLQQCFLHALKCR

Parental  IKKTDLPLLTSTFLGSHVFSCCPEGRQLDIKKSSYKKLSKFLQQMQQEQIIQVKELSKGVESIVAVDWKH
          .KKTDLPLLTS.FLGSHVFSCCPEGRQLDIKKSSYKKLSKFLQQMQQEQIIQVKELSKGVESIVAVDWKH
Retrocopy VKKTDLPLLTSAFLGSHVFSCCPEGRQLDIKKSSYKKLSKFLQQMQQEQIIQVKELSKGVESIVAVDWKH

Parental  PRITSFVIPEPSPTSQTIQEGSREQPYHPPDIKPLYCVPASMSLLFQESGHKKGSILEGSEVRMIIIDYA
          PRITS.VIPEPSPTSQTIQE.SREQPY.PPDIKPLYCVPASMSLLFQESGHKKGSILEGSEVRM.II.YA
Retrocopy PRITSLVIPEPSPTSQTIQEDSREQPYRPPDIKPLYCVPASMSLLFQESGHKKGSILEGSEVRMVIINYA

Parental  KKNDLVDADNKNLVHLDPILCDCILEKSEQHTVMKLPWDSLLTRCLEKLQPAYQVTFPGQGPVVKKGKIC
          KKNDLVDADNKNLVHLDPILCDCILE.SEQH.VMKLPWDSLLTRCL.KLQPAYQVTFPGQ.P.VKKGKIC
Retrocopy KKNDLVDADNKNLVHLDPILCDCILENSEQHIVMKLPWDSLLTRCLGKLQPAYQVTFPGQEPIVKKGKIC

Parental  PIDITLAQRASNKKVTVVRNLEAYGLDPCTVAATLQQRCQASTTVTPAPGAKDSLQVQIQGNQVHHLGRL
          PIDITLAQRASNKKVTVVRNLEAYGLDPCTVAATLQQRCQASTTVTPAPGAKDSLQVQIQGNQVH.LGRL
Retrocopy PIDITLAQRASNKKVTVVRNLEAYGLDPCTVAATLQQRCQASTTVTPAPGAKDSLQVQIQGNQVH-LGRL

Parental  LLEEYQLPRKHIQGLEKAPKPGKKK
          LLEEYQLPRKHIQGLEKAPKPGKKK
Retrocopy LLEEYQLPRKHIQGLEKAPKPGKKK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_63 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000008777	1 retrocopy	retro_meug_1854,
Myotis lucifugus	ENSMLUG00000001410	1 retrocopy	retro_mluc_63 ,
Monodelphis domestica	ENSMODG00000002070	1 retrocopy	retro_mdom_2028,
Sarcophilus harrisii	ENSSHAG00000017769	1 retrocopy	retro_shar_54,