RetrogeneDB ID: retro_mluc_616

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429769:3237970..3238995(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TTC7B
• Ensembl ID: ENSMLUG00000005584
• Aliases: None
• Description: None

Sequence

>retro_mluc_616
CAAGAGTTAGAAAAGATAATAGTGAGGCAGTTGGCAGAGATCTTGTTGTGGGATATGTGTGAACAGAGCTACTGGAATTC
TCTGGAGGACCCACCATTCCAGTTACCTCTGGATGATCCTCTCTGGAAAGAAGAAAACACAAAAATGTACACCCTCACTT
GAAAAACCTGCATCTATTCAGGAGAGAACCTTTTTTTGTCTTCAAGAAAATAGTGAAGAAGCCCTGTTGTTATTGCTGAT
TAGTGAATCTATGGCCAACCTGGATGCTGTGCTGAGCAGGATACCTTAGCATAAGAGTGACTGCCTCATCAGTCTGCAGA
GAGCCTCAGTGGTCTATAATCTACTGATTGTTGCTCTTGGAAGAAGAGACCAATTTGAGTTGCTGTTGGAGTGCTTAGAA
AAAGCCATGAAGTTTTCCTTTGAGTTCAACCTCTGGTATCAGTTTGTTCTGTCACTCATGGCTGCTGGAAAATCTGCCTG
GGCCTATGAAAGTACTGAAAGAATGCATTCAGCTAAAGCCTGATGACACCACCATCTTCCTCCTCACTGGGAAGCTGTGC
ATGGGCTCTATTTACTGGTTGAAAGAGGCTGAGAAGTTTGCCAAAACTGTCGTTGATGCAGGAGAGAAAATGTCTGAGTT
CAAGGTCAAAGGCTACTTCACTGTGGAACTCATGTAGAGTCTGAAGGCCACTGATGCTTCCTTGAGAAGGATACAGGAGG
TCCTGCAGAGAAAGGTGCTTCTTGCATTTCAGAGGGCCCACAGTCTATTACCTACAGATCATCAAGCAGCTTTCTACCTG
GCTCTGCAGCTCACCATCTCCAAACAGATACCAGAGGCTCTGGGGTATATCTATCAAGCTCTTCAGCTTCAAGGCTATGA
TGTCAATTATCTGCACCTCCTTGCCCTCTTGTTATCAGTACAGAAGCATTACCATGATGTTCTGAACATCATTGACATGG
CCCTGAGTGAATATCCAGAAAATTTTATACTACTGTTTTCCAAAATGAAGTTGGAGTCACTCTGC

Alignment

ORF - retro_mluc_616 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.03 %
• Parental protein coverage: 50.67 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  QNLRMTIARQLAEILLRGMCEQSYWNPLEDPPCQSPLDDPLRKGANTKTYSLSRKARVYSGENIF-CPQE
          Q.L...I.RQLAEILL..MCEQSYWN.LEDPP.Q.PLDDPL.K..NTK.Y.L..K...YSGEN.F.C.QE
Retrocopy QELEKIIVRQLAEILLWDMCEQSYWNSLEDPPFQLPLDDPLWKEENTKMYTLT*KTCIYSGENLF>CLQE

Parental  NTEEALLLLLISESMANRDAVLSRIPEHRSDRLISLQSASVVYDLLTIALGRRGQFEMLSECLERAMKFA
          N.EEALLLLLISESMAN.DAVLSRIP.H.SD.LISLQ.ASVVY.LL..ALGRR.QFE.L.ECLE.AMKF.
Retrocopy NSEEALLLLLISESMANLDAVLSRIP*HKSDCLISLQRASVVYNLLIVALGRRDQFELLLECLEKAMKFS

Parental  FEEFHLWYQFALSLMAAGKSARA-VKVLKECIRLKPDDATIPLLAAKLCMGSLHWLEEAEKFAKIVVDAE
          FE.F.LWYQF.LSLMAAGKSA.A..KVLKECI.LKPDD.TI.LL..KLCMGS..WL.EAEKFAK.VVDA.
Retrocopy FE-FNLWYQFVLSLMAAGKSAWA>MKVLKECIQLKPDDTTIFLLTGKLCMGSIYWLKEAEKFAKTVVDAG

Parental  EKTSEFKAKGYLALGLTYSLQATDASLRGMQEVLQRKALLAFQRAHSLSPTDHQAAFYLALQLAISRQIP
          EK.SEFK.KGY....L..SL.ATDASLR..QEVLQRK.LLAFQRAHSL.PTDHQAAFYLALQL.IS.QIP
Retrocopy EKMSEFKVKGYFTVELM*SLKATDASLRRIQEVLQRKVLLAFQRAHSLLPTDHQAAFYLALQLTISKQIP

Parental  EALGYVRQALQLQGDDVNSLHLLALLLSAQKHSHDALSIVDMALSEYPENFLLLFSKVKLESLC
          EALGY..QALQLQG.DVN.LHLLALLLS.QKH.HD.L.I.DMALSEYPENF.LLFSK.KLESLC
Retrocopy EALGYIYQALQLQGYDVNYLHLLALLLSVQKHYHDVLNIIDMALSEYPENFILLFSKMKLESLC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_616 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000005584	1 retrocopy	retro_mluc_616 ,
Oryctolagus cuniculus	ENSOCUG00000008905	1 retrocopy	retro_ocun_1222,