RetrogeneDB ID: retro_mluc_604

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429769:20215085..20215667(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: EIF2S2
• Ensembl ID: ENSMLUG00000005335
• Aliases: None
• Description: None

Sequence

>retro_mluc_604
AAAGAAAAAAGGATATTGGATATTGATGAAGCTGAAGAAGGTATAAAGGCTCTTAAGACTGAAAGTGATGTTCAAGAACC
AGCTGAAGCAGAGGATGATCTTGATATTGCACCTGACAATAAAAAGAAGAAATAGAAAAATGTCAAGTTCCCAGATGAGA
ATGAAATTCTAGAGAAAGACAAAGCGTTAGAAGATGAAGACAGCAAAAAAGATTATGGTCTCTCATTCAGTAACCATAAA
GGCCTTACGTAGGCAAGCTCAGAAAGAAACTACATGTATAAGGAGCTACTAAATCAAGTGTTCAAAATCATGAGGGAAAA
TAATCCAGATAAGGTTGCTGGAGAGAAAAGTAAATTTGTTATGATACCTCCAAAGGTCGTCTGAGTAGAAACCATGTCAA
CTTCTTTTGTCAACTTTACACATATCTGTAAACTATTACATCATCAGTTCAAACATCTCATTGTGTTTTTATTTGCTGAA
TTGGGTACAAGTGGTTCTATCTATGGTAATAACCAACTTGTAATCAAAAGAAGATTCTAAAAGAAACAGATAGAAAATGT
TTTTGAGAAGATGTATCAACAG

Alignment

ORF - retro_mluc_604 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 73.2 %
• Parental protein coverage: 58.26 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KTKKIFDIDEAEEGVKDLKIESDVQEPAEPEDDLDIMLGNKKKKKKNVKFPDEDEILEKDEALEDEDSKK
          K.K.I.DIDEAEEG.K.LK.ESDVQEPAE.EDDLDI...NKKKK.KNVKFPDE.EILEKD.ALEDEDSKK
Retrocopy KEKRILDIDEAEEGIKALKTESDVQEPAEAEDDLDIAPDNKKKK*KNVKFPDENEILEKDKALEDEDSKK

Parental  DDGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFT
          D.G.SFSN..G...A.SER.Y.Y.ELLN.VF.IMRE.NPD.VAGEK.KFVM.PP.VV.V.T..TSFVNFT
Retrocopy DYGLSFSNHKGLT*ASSERNYMYKELLNQVFKIMRENNPDKVAGEKSKFVMIPPKVV*VETMSTSFVNFT

Parental  DICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKE
          .ICKLLH.Q.KHL..FL.AELGTSGSI.GNNQLVIK.RF..KQIENV.......
Retrocopy HICKLLHHQFKHLIVFLFAELGTSGSIYGNNQLVIKRRF*KKQIENVFEKMYQQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_604 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 12 parental genes, and 19 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000007498	1 retrocopy	retro_cfam_2070,
Choloepus hoffmanni	ENSCHOG00000006521	1 retrocopy	retro_chof_271,
Callithrix jacchus	ENSCJAG00000018334	2 retrocopies	retro_cjac_4196, retro_cjac_697,
Cavia porcellus	ENSCPOG00000015439	1 retrocopy	retro_cpor_1143,
Echinops telfairi	ENSETEG00000001922	1 retrocopy	retro_etel_1101,
Myotis lucifugus	ENSMLUG00000005335	1 retrocopy	retro_mluc_604 ,
Monodelphis domestica	ENSMODG00000002805	5 retrocopies	retro_mdom_1981, retro_mdom_365, retro_mdom_368, retro_mdom_370, retro_mdom_837,
Mus musculus	ENSMUSG00000074656	1 retrocopy	retro_mmus_3200,
Otolemur garnettii	ENSOGAG00000001417	1 retrocopy	retro_ogar_196,
Pongo abelii	ENSPPYG00000010933	2 retrocopies	retro_pabe_1955, retro_pabe_2421,
Rattus norvegicus	ENSRNOG00000017447	1 retrocopy	retro_rnor_2395,
Tupaia belangeri	ENSTBEG00000009970	2 retrocopies	retro_tbel_1505, retro_tbel_2508,