RetrogeneDB ID: retro_mluc_6

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429767:35461210..35461618(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000029886
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000023167
• Aliases: None
• Description: None

Sequence

>retro_mluc_6
GCAGAGCCAAACACTAAACACCTACAATTGCAGAGTGACAAAGGCTACCTGCTCATGGGAGATGCACTCCTTATTCGCAC
ACTTGAGGGCACCTGGAGCCAACCTGCCCCTTCTTGTAAAGATGTGAACGGTAGCTCCCCAGAGTATATGAATGGAATCC
AGAAGGGGCTGGAGTCTGGGAAAAAGTGTCAGCATGGAGCAATTGTTACTTTGGAGTGTGAAGACGGATATACCCTGGAA
GGCAGTGGCCAGACCCAGTGCCTGGAGGATCACAGATGGAACCCTCACCTAGCTGTTTGCAAATCACAAAGCTCACTCAC
TCCTCTTGGTGGGCTTTCTGTAGGTTGTCTATTTCTGCTCTTCTTGATTGCTGTCACCTCATACATGATATCAAAACACA
GAGAACGC

Alignment

ORF - retro_mluc_6 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.4 %
• Parental protein coverage: 91.91 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DEGYLLVGEALLICTHEGTWSHPVPLCKELNCSSPEYMNGIQKGLESGKKYQHGAVVNLECEEGYTLEGS
          D.GYLL.G.ALLI.T.EGTWS.P.P.CK..N.SSPEYMNGIQKGLESGKK.QHGA.V.LECE.GYTLEGS
Retrocopy DKGYLLMGDALLIRTLEGTWSQPAPSCKDVNGSSPEYMNGIQKGLESGKKCQHGAIVTLECEDGYTLEGS

Parental  PQSQCLEDHGWNPPLAVCKSQVELSEDEGSLSVGLLFLLFLTAVTLYLIPKHRKR
          .Q.QCLEDH.WNP.LAVCKSQ..L....G.LSVG.LFLLFL.AVT.Y.I.KHR.R
Retrocopy GQTQCLEDHRWNPHLAVCKSQSSLT-PLGGLSVGCLFLLFLIAVTSYMISKHRER

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_6 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000023167	1 retrocopy	retro_mluc_6 ,