RetrogeneDB ID: retro_mluc_589

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429769:993074..993464(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: UCK2
• Ensembl ID: ENSMLUG00000016012
• Aliases: None
• Description: None

Sequence

>retro_mluc_589
GATGCTTTTGACAATAAACTCATACTCAAAACTTTCAAAGAAATTACTGAAGGGAAAACCGTGCAGATTCCTGTGTACGT
CTTTGACTCCCATTACCGGAAGGAGGAGATGGTCACCATCTACCTCGCGGATGTGGTCCTCTTTGAATGCATTTTGTCAT
TTTACTCTGAAGAGGTGCGAGACCTGTTCCAGATAAAGATCTTTGTGGACACTGATGCAGACACTAGGCTCTCCCGCAGA
GTACTAAGAGACATAAGTGAAAGAGGGAGGGACCTGTAACAGATTTTATCCCAGTACCTTACTTTTGTCAAACCTGCCTT
TGAGGAATTCTGCTTGCCTACAAAGAAATACGCAGACGTGATAATTCCTCAAGGTGTAGATAATCTAGTG

Alignment

ORF - retro_mluc_589 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.38 %
• Parental protein coverage: 74.29 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DAFDNELIFKTLKEIIEGKTVQIPVYDFVTHSRKEETVTVYRADVVLFEGILAFYSQEVRDLFQMKLFVD
          DAFDN.LI.KT.KEI.EGKTVQIPVY.F..H.RKEE.VT.Y.ADVVLFE.IL.FYS.EVRDLFQ.K.FVD
Retrocopy DAFDNKLILKTFKEITEGKTVQIPVYVFDSHYRKEEMVTIYLADVVLFECILSFYSEEVRDLFQIKIFVD

Parental  TDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGVDNLV
          TDADTRLSRRVLRDISERGRDL.QILSQY.TFVKPAFEEFCLPTKKYADVIIP.GVDNLV
Retrocopy TDADTRLSRRVLRDISERGRDL*QILSQYLTFVKPAFEEFCLPTKKYADVIIPQGVDNLV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_589 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Erinaceus europaeus	ENSEEUG00000013484	1 retrocopy	retro_eeur_199,
Myotis lucifugus	ENSMLUG00000016012	1 retrocopy	retro_mluc_589 ,
Oryctolagus cuniculus	ENSOCUG00000008446	1 retrocopy	retro_ocun_1924,
Pteropus vampyrus	ENSPVAG00000007694	1 retrocopy	retro_pvam_793,