RetrogeneDB ID:

retro_mluc_574

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429768:2791315..2791912(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMLUG00000023587
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:PCBP3
Ensembl ID:ENSMLUG00000003074
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_574
GTGACTGAAGGTTGATTAAATGTCACTCTCACCATCCGCCTACTTACGCATGGAAAGGAAGTTGGCAGTATCATGGGAAA
GAAAGGAGAATCAGTTAAGAAGATGCGCAAGGAGAGTGGTGCATGTATCAACATCTCAGAAGGGAATTGTTCTGAGAGAA
TTATCACTTTGACTGGACTCACTAATGCCATCTTCAAAGCCTTTGCTATGATCACGGACAAACTGGAAGAGGACATCAGC
AGCTCTATGACCAATAGCACAGCTGCCAGTAGACCCCCAGTCACCCTGTGGCTGGTGGTCCCTGCTAGTCAATGTGGCTT
TCTCATTGGGAAAGTAGCTGCAAGATCAAGGAAATAAGAGAGAGTACAGGGGCTCAGGTCCAGGTGGCAGGGGATATGCT
CCCCAACTCAACTGAGCAGGCCATCACTATTGCTGGCATTCCGCAATCCATCATGGAGTGTGTGAAACAGATCTGCGTGA
TCATGTTGGAGTCCCCCCTAAGGGTGTGACCATCCCATACTGGCCCAAGCCGTCCAGTTCTCTGGTCTCTTTGCAGGTGG
TCAAGCCTATACCATTCAAGGAAAGTGTACCATTCCA

ORF - retro_mluc_574 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 76.85 %
Parental protein coverage: 53.91 %
Number of stop codons detected: 1
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAM
V.EG.LNVTLTIRLL.HGKEVGSI.GKKGE.VKKMR.ESGA.INISEGNC.ERI.T.TG.T.AIFKAFAM
RetrocopyVTEG*LNVTLTIRLLTHGKEVGSIMGKKGESVKKMRKESGACINISEGNCSERIITLTGLTNAIFKAFAM
ParentalIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGK-GGSKIKEIRESTGAQVQVAGDMLPNSTE
I..K.EEDI..SM.NS.A.S.PPVTL.LVVPASQCG.LIGK....KIKEIRESTGAQVQVAGDMLPNSTE
RetrocopyITDKLEEDISSSMTNSTAASRPPVTLWLVVPASQCGFLIGK<SSCKIKEIRESTGAQVQVAGDMLPNSTE
ParentalRAVTISGTPDAIIQCVKQICVVMLES-PPKGATIPYRPKPASTPV-IFAGGQAYTIQGQYAIP
.A.TI.G.P..I..CVKQICV.MLES.PPKG.TIPY.PKP.S..V..FAGGQAYTIQG...IP
RetrocopyQAITIAGIPQSIMECVKQICVIMLES<PPKGVTIPYWPKPSSSLV<LFAGGQAYTIQGKCTIP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide