RetrogeneDB ID: retro_mluc_452

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: AAPE02065969:5886..6680(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000006411
• Aliases: None
• Description: Cellular tumor antigen p53 [Source:UniProtKB/TrEMBL;Acc:G1P6Z4]

Sequence

>retro_mluc_452
AACAATGTTCTGACCCCTGAAGTATCCCTGGCAATGGATGAACTGCTGTTGTCCCCAGACCTTGTAACCTGTCTGGACAA
AGGTCCAAATGAAGCCCCCAGTATGCCAGCAACTCCTGCACCAGCAGCTGCTATCCCAGCAACAGCCCCCTTCTGGCCCT
TGTCATCCTTTGTCCCTTCCCAGAAGACCTACCCTGACAGCTATGGTGTCTGTTTAGGATTCCTGAATTCTGGGACAGCA
GGTTTATAAACTGCACATACTTCTCTACCCTCAACTTATTGTTTTGCCAGCTAGCAAAGACTGACCTTCTGCAAGTGTAG
GTCAGCTCCCCACTCCCACTCAGTACCTGTGTCTGTGCCATGGCCATCTATGAGAAGTCCAAGTACATGACAGAGGTCAT
GAGTCACTGTTCCTACCATGAGTGTTGCTCTGACTCTAGCAATAGTCCAAGCCCTTCCTCAGCATCTTATCTGGGTGGAA
GGGAATTTATGTGCCGAGTATTTGCACAACAAAACTACATTTCAACATAGTATGGATGTGCCCTATGAGCCCCCTGATGT
GAACTCTGACTGTACCATCATTCACTACAACTTCAAGTGTAACAGCTCCTGCATGGGAGGCATGACTGGCAGCCCATCCA
CACCATCATCATGCTGAAAGACTCCAGTGGTCATCTGCTAGAACAGAACAGCTTTGAGATGTGTGCTTGCCCCTGTCCTG
GGAGAGACCAGAACTCAGAAGAAGAAAATTTCCACAAGAAAGAAAATTCTTGACTCAAGCAGCCCACTGGGAGC

Alignment

ORF - retro_mluc_452 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 60.22 %
• Parental protein coverage: 67.86 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  DNDLNPEDSQAVGGLGCMPFDLEDCLANGPDEASSMAATPAPAAAVPAPATPWTLSSSVPSPKTYPGSYG
          .N.L.PE.S.A...L...P.DL..CL..GP.EA.SM.ATPAPAAA.PA.A..W.LSS.VPS.KTYP.SYG
Retrocopy NNVLTPEVSLAMDELLLSP-DLVTCLDKGPNEAPSMPATPAPAAAIPATAPFWPLSSFVPSQKTYPDSYG

Parental  FRLEFLKSGTA-KSVTCTYSPMLNKLFCQMAKTCPVQLWVNSPPPLSSRVRAMAIYKKSEHMTEVVRRCP
          ..L.FL.SGTA.....CTY...LN.LFCQ.AKT...Q..V.SP.PLS..V.AMAIY.KS..MTEV...C.
Retrocopy VCLGFLNSGTA<RFINCTYFSTLNLLFCQLAKTDLLQV*VSSPLPLSTCVCAMAIYEKSKYMTEVMSHCS

Parental  HHERCSDYSDGLAP-PHHLIRVEGNLRAEYLDDPNTFRHSVVVPYEPPEVGSDYATIHYNFMCNSSCMGG
          .HE.CSD.S....P.P.HLI.VEGNL.AEYL....TF.HS..VPYEPP.V.SD...IHYNF.CNSSCMGG
Retrocopy YHECCSDSSNSPSP>PQHLIWVEGNLCAEYLHNKTTFQHSMDVPYEPPDVNSDCTIIHYNFKCNSSCMGG

Parental  M-NRRPILTIITLEDSNGNLLGRNSFEVRICACPGRDRRTEEENFRKKGEPSPKQPPGS
          M....PI.TII.L.DS.G.LL..NSFE...C.CPGRD...EEENF.KK.....KQP.GS
Retrocopy M<DWQPIHTIIMLKDSSGHLLEQNSFEMCACPCPGRDQNSEEENFHKKENS*LKQPTGS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_452 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000013135	2 retrocopies	retro_meug_1464, retro_meug_599,
Myotis lucifugus	ENSMLUG00000006411	3 retrocopies	retro_mluc_2049, retro_mluc_2050, retro_mluc_452 ,
Monodelphis domestica	ENSMODG00000007271	1 retrocopy	retro_mdom_372,
Rattus norvegicus	ENSRNOG00000010756	1 retrocopy	retro_rnor_1411,
Sarcophilus harrisii	ENSSHAG00000015510	1 retrocopy	retro_shar_250,