RetrogeneDB ID: retro_mluc_45

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429922:1132740..1134159(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000024112
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000002172
• Aliases: None
• Description: None

Sequence

>retro_mluc_45
ATGTCCCGCCGCAAGGCCGGCTGCAAGCCCCGCCGAGTAGACCCCGAGTCCGCCGCCCACACCGACGATGAGATGGAGAT
GGGGGACCTGGTCATAAATGTGAAGCCCGAGCCACATCCGTGGCCCCTACAGGCCGCGGAGCTGCAGCGGGGTTCTCCAA
AGGAAGTGCCCACGCCAGGTCGCCTGGAGGCCGCACCCCGCTCCTGCCCTACCCTGGTGCCCACTGCCGCCGGTACCGTC
CTCGCCCTCGGCTTGCAGAACCAGTCGGCGCCGTGGACTTCTCTGGTCCCTAATCCTCACGACCGCCAGCCCTGGACTGG
CAAACACACAGATACGTTGACCTGCGACCTCTGCCTGCAGACCTTCCCGCTGAAGGCCATCAAGGCTTTCGTGGACCACA
AGAAGCAGGGCTGTCAGCCCTCTCGAGGCCGCAGCCCTTGCCCGGACTCAGAACTCGAGAACCTGAAGGCTTTGACTTGC
CTCCGCTGTGGCCGACAATTCACAGAGGCCTGGAAACTGCTGCACCATGCCCAGTGGGACCACGGACTGTCCATCTACCA
GACACAATCTGAGGCCCCAGAGACTCCGCTGCTGCGCCCAGCAGAGGTGGCTGCAGCCAGGTCAGCAGTGGTGGGGCAGG
AAGTGGAGGCCAAGGGCTCCCGGGCGAACAGCCTCCCCCAGCGGAGCCCCACCTGCCTTGTGTGCTTGAAGACCCTCAGC
ACCTTCAGCAACCTGAAGGTGCACATGCGCTCGCACACGGGCGAGCGGCCCTACACCTGTGACCAGTGTTCTTACGCCTG
TGCCCACAGCAGCAGGCTCAACCGCCACAAGAAGACCCACGGGCAGCTGCAGCCTCAGAGCCCCTACACGGCCAAGGCCA
GTCAGGAACAGGCCTCAGCTGCGCCTCCAGAGCCAGCCGCCCATGCCGCTGCCCCAGCCAGGACTCTCCTGTGCAGCCCT
GAAGGGGCTGGAGCTGCCGACACAGCAGGTGTGCAGGAACCTGGTGCTCCAGGTGGTGGAGCTCAGGCTGGTCCTGGTGG
GGACAGTTGGGGCGATGCCATCAAGGAAGAGAGAATCAACTCTGCCCAGATCCCAGAGAAGTTGCCTAAGAAGACTCCAA
AGACAGTGGGCAAGAGCCATGGGCCCGGGGGCAGCTGTGAGTTCTGTGGGAAACGTTTCACCGACAGCAGCAGCCTGACT
GTGCACCGGCGCTCACACACCGGGGAGCGGCCCTATACCTGCGAGCTCTGCTCCTTTGCCTGTGCCAAGAGGAGCAAGCT
TAACCGCCACCGCCTCGTTCGTGGTCTGGGGTCCGGCGGTGCTCGCTTTGAGTGCCCCCACTGCCGTGTGCCCTTCCGCC
TGCAGGTCACCCTGGACAAACACCTGTGGCAGAAGCACCCCAAAGCAGGCGGGGAGGCC

Alignment

ORF - retro_mluc_45 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.97 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSRRKAGCMPRRVDPEPAAHTDDDETEMGDLVIDVKPEPHSWPLQAARLQRGSPKEVPAPGRLEGAPRSC
          MSRRKAGC.PRRVDPE.AAHTDD.E.EMGDLVI.VKPEPH.WPLQAA.LQRGSPKEVP.PGRLE.APRSC
Retrocopy MSRRKAGCKPRRVDPESAAHTDD-EMEMGDLVINVKPEPHPWPLQAAELQRGSPKEVPTPGRLEAAPRSC

Parental  PSLMP-AVGTLLALGLQNQPAPWTSLVPNPHDRQPWTDKHPDTLTCGLCLQTFPLKAITAFMDHKKQGCQ
          P.L.P.A.GT.LALGLQNQ.APWTSLVPNPHDRQPWT.KH.DTLTC.LCLQTFPLKAI.AF.DHKKQGCQ
Retrocopy PTLVPTAAGTVLALGLQNQSAPWTSLVPNPHDRQPWTGKHTDTLTCDLCLQTFPLKAIKAFVDHKKQGCQ

Parental  PSRGPSPCPDSELEDLKALTCLRCGRQFTEAWKLLRHAQWDHGLSIYQTESEAPEAPLLGLAEVAAAMSA
          PSRG.SPCPDSELE.LKALTCLRCGRQFTEAWKLL.HAQWDHGLSIYQT.SEAPE.PLL..AEVAAA.SA
Retrocopy PSRGRSPCPDSELENLKALTCLRCGRQFTEAWKLLHHAQWDHGLSIYQTQSEAPETPLLRPAEVAAARSA

Parental  VVGQEVEAKGSQANSLPRRSPTCSVCMKTLSSFSNLKVHMRSHTGERPYACDQCSYACAQSSKLNRHKKT
          VVGQEVEAKGS.ANSLP.RSPTC.VC.KTLS.FSNLKVHMRSHTGERPY.CDQCSYACA.SS.LNRHKKT
Retrocopy VVGQEVEAKGSRANSLPQRSPTCLVCLKTLSTFSNLKVHMRSHTGERPYTCDQCSYACAHSSRLNRHKKT

Parental  HQQLQPQSPYTAKASQEQASAAPPEPAAHAAAPARTLLCSREGAGAADTAGVQEPGAPGGGAQAGPGGDG
          H.QLQPQSPYTAKASQEQASAAPPEPAAHAAAPARTLLCS.EGAGAADTAGVQEPGAPGGGAQAGPGGD.
Retrocopy HGQLQPQSPYTAKASQEQASAAPPEPAAHAAAPARTLLCSPEGAGAADTAGVQEPGAPGGGAQAGPGGDS

Parental  CGVAIKKERINSAQIPEKLPKKTPKTVGKSHGPGGSCEFCGKRFTNSSNLTVHRRSHTGERPYTCELCPY
          .G.AIK.ERINSAQIPEKLPKKTPKTVGKSHGPGGSCEFCGKRFT.SS.LTVHRRSHTGERPYTCELC..
Retrocopy WGDAIKEERINSAQIPEKLPKKTPKTVGKSHGPGGSCEFCGKRFTDSSSLTVHRRSHTGERPYTCELCSF

Parental  ACAQSSKLNRHRRMHGLGPGGARFECPHCRVPFGLRATLDKHLRQKHPQAGGEA
          ACA..SKLNRHR...GLG.GGARFECPHCRVPF.L..TLDKHL.QKHP.AGGEA
Retrocopy ACAKRSKLNRHRLVRGLGSGGARFECPHCRVPFRLQVTLDKHLWQKHPKAGGEA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_45 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000002172	4 retrocopies	retro_mluc_2424, retro_mluc_45 , retro_mluc_70, retro_mluc_9,