RetrogeneDB ID: retro_mluc_440

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: AAPE02064999:7505..8522(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TAF4
• Ensembl ID: ENSMLUG00000010291
• Aliases: None
• Description: None

Sequence

>retro_mluc_440
CCCAAGCCCGGAGCACGGATCAGGCCCCCGCAGGTGATGCTGACGCAGACGCCCACTGTGGCCCTCCGGCAGCCCCACCA
CCGCCTCCTGCTGACCACACCCCAGCAGACCCAGCTGAACCCACTGCAGCCAGTCCCGGTGGTGAAACCTGCTGTGTTAC
CTGGAACCAAAGCTCTTTCTGCTGTCTCGGCCCAAGCAGCTGCTGGGCAGAAAAATAAACTCCAGGAGCCTGGCGGAAGC
TCGTTTCGGGACGACGATGACATTAACGACGTGGCGTCTATGGCTGGAGTAAACCTAAGGGAAGAAAGGTCAAGGATCTT
AGCCACGAGCTCTGAGGTGGTGGGCACGCTTACACGTTCTTGCGAAGACGAAACCTTCCTCCTGCCAGCGCCTCTGCAGA
GAAGGACATTGGAAATAGGTAAGAAACACGGCATAACGGAACTGCACCCCGACGTCGTGAGTTACGTGTCACGCGCCACG
CAACAGAGGCTGCAGAACCTCGTGGAAACGATATCAGAAACGGCTCAGCTGAAGAACTTTTCTCATAAGGATGATGACAG
ATATGAGCAGGCGAGTGATGTTCAGGCTCAGCTCAGATTTTTTGAACAACTCGATCAGATTAAAAAACAGGGGAAAGATG
GACAGGAAAGAGAGATTTTAATGCGAGCAGCCAAGTCTCGCTCCAGACAAGAGGATCCAGAACAATTAAGGCTGAAACAG
AAGGCGAAAGCTATGCAGCAGCAGGAGCATGCGCAGATGAGGCTGCGTGAGGCCAATCTCGCCTCACTGGCAGCCATCGG
GCCCCACAAGAAGCGGAAAGTGGACTCCCCGGGACCGGGCTCCGGGACAGAGGGGTCCGGCCCGGGCTCTGCAGTCCCCC
GCAGCTCCGGCGTGGGAACCCCCCGACAGTTCACACGACAAAGGATCACGCGGGTCAACCTCAGGGACCTCATATTTTGT
CTAGAAAAAGAACGGGAGACACGCCGTTCCCTGTTGCTCTATAAAGCCTTCCTTAAG

Alignment

ORF - retro_mluc_440 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.12 %
• Parental protein coverage: 53.38 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PKPGALIRPPQVTLTQTPMVALRQPHNRIVLTTPQQIQLNPLQPVPVVKPAVLPGTKALSAVSAQAAAAQ
          PKPGA.IRPPQV.LTQTP.VALRQPH.R..LTTPQQ.QLNPLQPVPVVKPAVLPGTKALSAVSAQAAA.Q
Retrocopy PKPGARIRPPQVMLTQTPTVALRQPHHRLLLTTPQQTQLNPLQPVPVVKPAVLPGTKALSAVSAQAAAGQ

Parental  KNKLKEPGGGSFRRDDDDINDVASMAGVNLSEESARILATNSELVGTLTRSCKDETFLLPAPLQRRILEI
          KNKL.EPGG.SFR.DDDDINDVASMAGVNL.EE..RILAT.SE.VGTLTRSC.DETFLLPAPLQRR.LEI
Retrocopy KNKLQEPGGSSFR-DDDDINDVASMAGVNLREERSRILATSSEVVGTLTRSCEDETFLLPAPLQRRTLEI

Parental  GKKHGITELHPDVVSYVSHATQQRLQNLVEKISETAQQKNFSHKDDDRYEQASDVRAQLKFFEQLDQIEK
          GKKHGITELHPDVVSYVS.ATQQRLQNLVE.ISETAQ.KNFSHKDDDRYEQASDV.AQL.FFEQLDQI.K
Retrocopy GKKHGITELHPDVVSYVSRATQQRLQNLVETISETAQLKNFSHKDDDRYEQASDVQAQLRFFEQLDQIKK

Parental  QRKDEQEREILMRAAKSRSRQEDPEQLRLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKKRKVDSPGP
          Q.KD.QEREILMRAAKSRSRQEDPEQLRLKQKAK.MQQQE.AQMR.R.ANL..LAAIGP.KKRKVDSPGP
Retrocopy QGKDGQEREILMRAAKSRSRQEDPEQLRLKQKAKAMQQQEHAQMRLREANLASLAAIGPHKKRKVDSPGP

Parental  GSGTEGSGPGSAVPGSSGVGTPRQFTRQRITRVNLRDLIFCLENERETSHSLLLYKAFLK
          GSGTEGSGPGSAVP.SSGVGTPRQFTRQRITRVNLRDLIFCLE.ERET..SLLLYKAFLK
Retrocopy GSGTEGSGPGSAVPRSSGVGTPRQFTRQRITRVNLRDLIFCLEKERETRRSLLLYKAFLK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_440 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000010291	4 retrocopies	retro_mluc_2540, retro_mluc_402, retro_mluc_413, retro_mluc_440 ,
Monodelphis domestica	ENSMODG00000016684	1 retrocopy	retro_mdom_230,