RetrogeneDB ID: retro_mluc_43

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429835:4378532..4380002(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000006820
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000008798
• Aliases: None
• Description: None

Sequence

>retro_mluc_43
ATGTCGGCCGCGGCGGCCCGAGCCGTGATCTCACCCGTGGCGCGGCCGCCGCTTTGGAGTTTCGCCCGGAGGTTCCTGGT
CGGAGGCGCTGCCGGATGGCCATCGCATCTGGGAGGAAACAGACCAAGAAGCACCCGGGCGGCGGCGCAGGTGGTTCTCA
ATGTCCCCGAAACGCGAGTGACCCGTTTGGAGAACGGCCTCCGGGTGGCCTCCGAGGACTCCGGGCTGTCCACGTGCACA
GTCGGGCTCTGGATCGATGCTGGAAGTCGGTATGAAAATGAGAAGAATAATGGAACAGCTCACTTTCTGGAGCATATGGC
TTTCAAGGGCACCAAAAAGAGATCCCAGTTAGATCTGGAACTTGAAATTGAAAACATGGGTGCTCATCTCAATGCCTATA
CTTCCAGAGAGCAGACTGTATATTATGCCAAAGCATTTTCTAAAGATTTGCCAAGAGCTGTAGAAATTCTTGCTGATATA
ATACAAAATAGCACATTGGGAGAAGCAGAGATTGAACGTGAACGAGGAGTAATCCTTAGAGAGATGCAGGAAGTTGAAAC
CAACTTACAAGAAGTAGTTTTCGATTATCTTCATGCCACAGCTTATCAAAATACTGCACTTGGACGGACAATTTTGGGAC
CAACTGAAAATATCAAATCTATAAATCGTAAGGATTTAGTGGATTATATAACTACACATTATAAGGGACCAAGGATAGTA
CTTGCTGCTGCTGGAGGAGTTTCCCATGATGAACTGCTTGAGTTAGCAAAGTTTCATTTTGGTGACTCTTTGTCCACATA
CAAAGGAGAAACACCAGCTCTGCCTCCCTGCAAATTCACAGGAAGTGAGATTCGAGTTAGAGATGACAAGATGCCTTTAG
CACATCTTGCAATAGCTGTTGAAGCTGTTGGTTGGGCACATCCGGATACAATCTGTCTCATGGTTGCAAACACACTAATT
GGCAACTGGGATCGCTCTTTTGGAGGAGGAATGAACTTATCTAGTAAGCTGGCCCAGCTTACCTGTCACGGCAACCTCTG
CCATAGCTTCCAGTCTTTCAACACTTGCTACACAGATACTGGATTATGGGGAATCTATATGGTTTGTGAACCAGCCACTG
TTGCAGATATGTTACATGTTGTTCAAAAAGAATGGATACGACTCTGTACAAGTGTCACTGAAAGTGAAGTTGCACGAGCC
AAAAACCTTCTGAAAACAAACATGTTGTTGCAACTCGATGGTTCTACTCCAATTTGTGAAGATATTGGTAGGCAAATGTT
GTGCTATAATAGAAGAATTCCCATCCCTGAGCTTGAAGCAAGAGTAGATGCTGTGAATGCTGAGACAGTTCGAGAAGTAT
GTTCCAAATATATTTATGACAAGAGTCCAGCTATTGCTGCTGTTGGTCCCATTGAGCAACTACCAGATTTTAACAGGATT
CGCAGTAACATGTGCTGGCTTCGCAGTTAA

Alignment

ORF - retro_mluc_43 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.91 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ANQPSHLGGNRPRSTRAAAQVVLNVPETRVTRLENGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTA
          A..PSHLGGNRPRSTRAAAQVVLNVPETRVTRLENGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTA
Retrocopy AGWPSHLGGNRPRSTRAAAQVVLNVPETRVTRLENGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTA

Parental  HFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAE
          HFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAE
Retrocopy HFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAE

Parental  IERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPRIV
          IERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPRIV
Retrocopy IERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPRIV

Parental  LAAAGGVSHDELLELAKFHFGDSLSTYKGETPALPPCKFTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDT
          LAAAGGVSHDELLELAKFHFGDSLSTYKGETPALPPCKFTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDT
Retrocopy LAAAGGVSHDELLELAKFHFGDSLSTYKGETPALPPCKFTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDT

Parental  ICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTCYTDTGLWGIYMVCESATVADMLHV
          ICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTCYTDTGLWGIYMVCE.ATVADMLHV
Retrocopy ICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTCYTDTGLWGIYMVCEPATVADMLHV

Parental  VQKEWIRLCTSVTESEVARAKNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARVDAVNAETI
          VQKEWIRLCTSVTESEVARAKNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARVDAVNAET.
Retrocopy VQKEWIRLCTSVTESEVARAKNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARVDAVNAETV

Parental  REVCSKYIYDKSPAIAAVGPIEQLPDFNRIRSNMCWLRN
          REVCSKYIYDKSPAIAAVGPIEQLPDFNRIRSNMCWLR.
Retrocopy REVCSKYIYDKSPAIAAVGPIEQLPDFNRIRSNMCWLRS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_43 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000021200	1 retrocopy	retro_cjac_228,
Myotis lucifugus	ENSMLUG00000008798	1 retrocopy	retro_mluc_43 ,
Rattus norvegicus	ENSRNOG00000012693	1 retrocopy	retro_rnor_2963,
Tursiops truncatus	ENSTTRG00000010699	1 retrocopy	retro_ttru_1171,