RetrogeneDB ID: retro_mluc_426

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: AAPE02063173:555..1126(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000028736
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: EFNA2
• Ensembl ID: ENSMLUG00000007874
• Aliases: None
• Description: None

Sequence

>retro_mluc_426
CCTGCCGCCGCTGCGGAGGGCGCCTCCAGAGCCAACTCGGACCGCTACACAGTCTACTTGAACCGCAGCAACCCCAGGCT
CCACACGGGTTCGGGGGACGACCGTGGGGGCTGCACGGTGGAGGTGAGCATCAGTGACTACCTGGACATCTACTGTCGCT
ACGGGGTGCGGCTGCCTCCAGCTGAGCGCATGGAGCACTACGTGCTGTACATGGTCAACAGCGAGGGCCACGCCTCCTGC
GACCACCAGCAGCGCGGCTTCAAGCCCTGGGAGTGCAACATGCTCGCAGAGCCCGGGGGCCACTCAAGTTCTCCGAGAAG
TTCCAGCTCTTCACGCCCTTCTCGCTGGGCTTCGAGTTCCGCCCGGGGCCACGAGTATTACTACATCTCTGCCACACCAC
CAATGCTGTTGACCGGCCCTGCCTTCGGCTAAAGGTTTATGTGCGGCCAAGCAATGAGACCCTGTATGAGGCCCCTGAGC
CATCTTCACCAGCAATAATTCGTGCAGTAGCCTGGGCAGCTGTCAGCTCTTCCTCAGCACTGTCCCGGTACTCTGGACCC
TTTTGGGCTCT

Alignment

ORF - retro_mluc_426 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.73 %
• Parental protein coverage: 89.3 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  PLARAEDASRANSDRYAVYWNRSNPRFHAGAADDRGGYTVEVSINDYLDIYCPHYGAPLPPAERMEHYVL
          P.A.AE.ASRANSDRY.VY.NRSNPR.H.G..DDRGG.TVEVSI.DYLDIYC..YG..LPPAERMEHYVL
Retrocopy PAAAAEGASRANSDRYTVYLNRSNPRLHTGSGDDRGGCTVEVSISDYLDIYC-RYGVRLPPAERMEHYVL

Parental  YMVNGEGHASCDHRQRGFKRWECNRPAAPG-GPLKFSEKFQLFTPFSLGFEFRP-GHEYYYISATPP-NA
          YMVN.EGHASCDH.QRGFK.WECN..A.PG.GPLKFSEKFQLFTPFSLGFEFRP.GHEYYYISATPP.NA
Retrocopy YMVNSEGHASCDHQQRGFKPWECNMLAEPG<GPLKFSEKFQLFTPFSLGFEFRP>GHEYYYISATPP<NA

Parental  VDRPCLRLKVYVRPTNETLYEAPEP-IFTSNNSCSSLGSCQLFLSTVPVLWTLLGS
          VDRPCLRLKVYVRP.NETLYEAPEP.IFTSNNSCSSLGSCQLFLSTVPVLWTLLGS
Retrocopy VDRPCLRLKVYVRPSNETLYEAPEP<IFTSNNSCSSLGSCQLFLSTVPVLWTLLGS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_426 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000007874	3 retrocopies	retro_mluc_2582, retro_mluc_2620, retro_mluc_426 ,