RetrogeneDB ID: retro_mluc_423

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: AAPE02062568:6640..7819(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000027816
• Aliases: None
• Description: None

Sequence

>retro_mluc_423
GACCTCCCCCCCGGGGGCCATGACGAGCTGTCTCAAGGGACCCGCAACTACAAGAAAACCCTGCTCCTGCGGCACCACGT
CTCCACAGAGCACAAGCTCCACGAAGCCAAAGCCCAGGAATCAGAAATACCTTCAGAAGAGGGATACTGTGACTTTAATA
GTAGGCCAAATGAAAACTCTTATTGCTATCAACTTCTTCAACAATTAAATGAGCAGAGAAAGAAAGGTATTCTTTGTGAT
GTCAGCATTGTGGTGAGTGGAAAAATCTTTAAAGCTCATAAGAACATCCTGGTTGCAGGCAGCCGTTTCTTTAAGACTTT
ATATTGCTTTCCCAACAAAGAAAATCCTAACCAAAACAATACTACCCACTTAGATATTGCTTCAGTTCAAGGTTTCTCCG
TCATCTTGGACTTCCTGTACTCTGGTAACCTGGTGCTCACAAGCCAAAATGCCATTGAAGTGATGACCGTGGCCAGCTAT
CTGCAAATGAGCGAAGTTGTTCAGACTTGCCGAAATTTCATTAAAGATGCCTTAAATGTAAGCATTAAATCTGAAGCTCC
GGAGACTGTGGTTGTGGACTATAACAACAGAAAACCAGTCAGTAGAGATGGTCTGTCTTCATCACGGGATCAAAAAATTG
CCAGTTTTTGGGCAACACGGAATCTTTCCAATTTGGCAAGTAATGCAAAACCTGAAAATGATGGTTGCAATGTTGATGAG
GGCCAAATGGAGAACTACCAAATGAATGACAGTGGTTGGGTCCAGGATGGTTCATCTGAATTGGCTGAAAGTGAAGCCTC
AAGTCAAACAAAAGTGTTTATTTGGAATAATATGGGCTCCCAGGGAATTCAAGAAACTGGCAACAAAACTAGGAGGAAAA
ACCAAACTCCAAAGAGATTTATTTATAATTTACCACCTAATAATGAAACAAGTGTAGAAGATTGCTCCGGGATGCAGCCA
CCTGTTGCCTATCCAGAAGAAGATATGTCATTCATTAAGGAAGAACCGGATCTGGATGGTGCTCTGCTCCTGGGGCCGGA
CTGTGACAGGAATGTGAACGCAAATGTACTGGCAGAAGCCAGCTTGGGGCAGGATGCAGGCGATGCTGGTACTTCACATG
ATTTCAAGTATGGCCTGATGCCTGGCCCATCAAGTGATTTCAAGTATGGATTGTTGCCT

Alignment

ORF - retro_mluc_423 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.91 %
• Parental protein coverage: 59.01 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DLPPGGHDELSRGTRNYKKTLLLRHHVSTEHKLHEANAQESEIPSEEGYCDFNSRPNENSYCYQLLRQLN
          DLPPGGHDELS.GTRNYKKTLLLRHHVSTEHKLHEA.AQESEIPSEEGYCDFNSRPNENSYCYQLL.QLN
Retrocopy DLPPGGHDELSQGTRNYKKTLLLRHHVSTEHKLHEAKAQESEIPSEEGYCDFNSRPNENSYCYQLLQQLN

Parental  EQRKKGILCDVSIVVSGKIFKAHKNILVAGSRFFKTLYCFSNKESPNQNNTTHLDIAAVQGFSVILDFLY
          EQRKKGILCDVSIVVSGKIFKAHKNILVAGSRFFKTLYCF.NKE.PNQNNTTHLDIA.VQGFSVILDFLY
Retrocopy EQRKKGILCDVSIVVSGKIFKAHKNILVAGSRFFKTLYCFPNKENPNQNNTTHLDIASVQGFSVILDFLY

Parental  SGNLVLTSQNAIEVMTVASYLQMSEVVQTCRNFIKDALNISIKSEAPESVVVDYNNRKPVSRDGLSSSRD
          SGNLVLTSQNAIEVMTVASYLQMSEVVQTCRNFIKDALN.SIKSEAPE.VVVDYNNRKPVSRDGLSSSRD
Retrocopy SGNLVLTSQNAIEVMTVASYLQMSEVVQTCRNFIKDALNVSIKSEAPETVVVDYNNRKPVSRDGLSSSRD

Parental  QKIASFWATRNLTNLASNVKTENDGCNVDEGQMENYQMNDSGWAQDGSPELTESEAPSQTKVFIWNNMGS
          QKIASFWATRNL.NLASN.K.ENDGCNVDEGQMENYQMNDSGW.QDGS.EL.ESEA.SQTKVFIWNNMGS
Retrocopy QKIASFWATRNLSNLASNAKPENDGCNVDEGQMENYQMNDSGWVQDGSSELAESEASSQTKVFIWNNMGS

Parental  QGIQETGNKTRRKNQTAKRFIYNIPPNNETSLEDCSVMQPPVAYPEEDMSFIKEEPDLDGALLPGPDCDR
          QGIQETGNKTRRKNQT.KRFIYN.PPNNETS.EDCS.MQPPVAYPEEDMSFIKEEPDLDGALL.GPDCDR
Retrocopy QGIQETGNKTRRKNQTPKRFIYNLPPNNETSVEDCSGMQPPVAYPEEDMSFIKEEPDLDGALLLGPDCDR

Parental  NVNANVLAEASLGQDAGDAGTSHDFKYGLMPGPSSDFKYGLLP
          NVNANVLAEASLGQDAGDAGTSHDFKYGLMPGPSSDFKYGLLP
Retrocopy NVNANVLAEASLGQDAGDAGTSHDFKYGLMPGPSSDFKYGLLP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_423 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000027816	2 retrocopies	retro_mluc_109, retro_mluc_423 ,