RetrogeneDB ID: retro_mluc_418

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: AAPE02061493:20780..21134(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: C20ORF11
• Ensembl ID: ENSMLUG00000016381
• Aliases: None
• Description: None

Sequence

>retro_mluc_418
GTGAGCTATACAGAAAAACCTGATGAAATCACAAAAGATGAGTGGATGGAAAAGCTCAACAACTTACACGTGCAGCGAGC
AGACATGAATCGTCTCATCACGAACTACCTAATCACAGACGGCTTTAAGGAAGCTGCAGAGAAGTTTCGAATGGAGTCCG
GGATTGAGCCTAGTGTGGATCTAGAAACCCTTGATGAGCGGATCAAAATCCGTGAGATGATCCTAAAGGGGCAGATTCAG
GAGGCAATCGCCTTGATCAACAGCCTCCACCCAGAACTGCTGGACACCAACCGCTACCTTTACTTCCACCTGCAGCAACA
GCACCTGATGGAGCTGATCTGCCAGCGGGTGACC

Alignment

ORF - retro_mluc_418 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.07 %
• Parental protein coverage: 51.75 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSYTEKPDEITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIKI
          .SYTEKPDEITKDEWMEKLNNLHVQRADMNRLI.NYL.T.GFKEAAEKFRMESGIEPSVDLETLDERIKI
Retrocopy VSYTEKPDEITKDEWMEKLNNLHVQRADMNRLITNYLITDGFKEAAEKFRMESGIEPSVDLETLDERIKI

Parental  REMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRET
          REMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHL.ELI.QR.T
Retrocopy REMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLMELICQRVT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_418 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000012749	1 retrocopy	retro_cfam_1551,
Myotis lucifugus	ENSMLUG00000016381	2 retrocopies	retro_mluc_417, retro_mluc_418 ,
Monodelphis domestica	ENSMODG00000016835	1 retrocopy	retro_mdom_1208,
Mus musculus	ENSMUSG00000027573	1 retrocopy	retro_mmus_1267,
Otolemur garnettii	ENSOGAG00000013834	1 retrocopy	retro_ogar_2550,
Rattus norvegicus	ENSRNOG00000010180	1 retrocopy	retro_rnor_2248,
Sorex araneus	ENSSARG00000013102	2 retrocopies	retro_sara_396, retro_sara_598,