RetrogeneDB ID: retro_mluc_408

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: AAPE02060622:14533..15384(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000030340
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: GPN3
• Ensembl ID: ENSMLUG00000015510
• Aliases: None
• Description: None

Sequence

>retro_mluc_408
ATGCCTCGGTATGGGCAGCTGGTCATGGGCCCCGCAGGCAGCGGGAAGAGTACTTACTGTGCCACCATGGTCCAGCACTG
TGAAGCCCTCAATCGGCCTGTCCAGGTTGTGAACCTTGATCCTGCAGCAGAACACTTAAACTACTCCTTAATGGCTGACA
TCTGGGAACTGATCGAGGTGGATGACGTGATGGAGGATGATTCTCTGCGGTTCGGTCCCAATGGAAGATTGGTGTTTTGC
ATGGAGTACTTCGCCAATCATTTTGACTGGCTAGAGAGCTGTCTTGGTCACGTAGAGGATGACTACATCCTTTTTGACTG
TCCAGGTCAGATCCAGTTGTATACGCATCTGCCTGTGATGAAACAACTGGTCCAGCAGCTAGAACAGTGGGAGTTCCGAG
TCTGTGGAGTTTTTCTGGTCGATTCACAGTATATGGTGGAGTCTATTAAGTTTATTTCTGGCGTCTTGGTGGCCCTGAGT
GCAATGATCTCTCTAGAAATTCCACAAGTTAGCATCATGACGAAATGGACCTGCTGAGTAAGAAAGCTAAGAAGGAAATT
GAGAAGTTTCTAGATCCAGACATGTATTCTTTATTAGATGATTACTCAAGTAACTTAAGAAGCAAAAAATTCAAAAAATT
GACTAACGCTATATGTGGACTGATTGACGACTACAGCATGGTTCGATTTTTGCCTTATGATCAGTCAGATGAAGAAAGCA
TGAACATTGTATTACAGCATATTGATTTTGCCATTCAGTATGGAGAAAATTTGGCATTTAAAGAACCAAAGGAGCATGAA
GATGAGTCATCTTCTATGTTTGATGAATATTTTCAAGAACATCAGAATGAA

Alignment

ORF - retro_mluc_408 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.58 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MPRYAQLVMGPAGSGKSTYCATMVQHCEALSRSVQVVNLDPAAEHFSYPVMADIRELIEVDDVMEDDSLR
          MPRY.QLVMGPAGSGKSTYCATMVQHCEAL.R.VQVVNLDPAAEH..Y..MADI.ELIEVDDVMEDDSLR
Retrocopy MPRYGQLVMGPAGSGKSTYCATMVQHCEALNRPVQVVNLDPAAEHLNYSLMADIWELIEVDDVMEDDSLR

Parental  FGPNGGLVFCMEYFANNFDWLESCLGHVEDDYILFDCPGQIELYTHLPVMKQLVQRLEQWEFRVCGVFLV
          FGPNG.LVFCMEYFAN.FDWLESCLGHVEDDYILFDCPGQI.LYTHLPVMKQLVQ.LEQWEFRVCGVFLV
Retrocopy FGPNGRLVFCMEYFANHFDWLESCLGHVEDDYILFDCPGQIQLYTHLPVMKQLVQQLEQWEFRVCGVFLV

Parental  DSQFMVESFKFISGILAALSAMISLEIPQVNIMTK-MDLLSKKAKKEIEKFLDPDMYSLLDDSTSDLRSK
          DSQ.MVES.KFISG.L.ALSAMISLEIPQV.IMTK.MDLLSKKAKKEIEKFLDPDMYSLLDD..S.LRSK
Retrocopy DSQYMVESIKFISGVLVALSAMISLEIPQVSIMTK<MDLLSKKAKKEIEKFLDPDMYSLLDDYSSNLRSK

Parental  KFKKLTKAICGLIDDYSMVRFLPYDQSDEESMNIVLQHIDFAIQYGEDLEFKEPKEHEDESSSMFDEYFQ
          KFKKLT.AICGLIDDYSMVRFLPYDQSDEESMNIVLQHIDFAIQYGE.L.FKEPKEHEDESSSMFDEYFQ
Retrocopy KFKKLTNAICGLIDDYSMVRFLPYDQSDEESMNIVLQHIDFAIQYGENLAFKEPKEHEDESSSMFDEYFQ

Parental  EHQNE
          EHQNE
Retrocopy EHQNE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_408 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000009339	1 retrocopy	retro_cjac_2969,
Dasypus novemcinctus	ENSDNOG00000016646	1 retrocopy	retro_dnov_2095,
Homo sapiens	ENSG00000111231	1 retrocopy	retro_hsap_652,
Gorilla gorilla	ENSGGOG00000001697	1 retrocopy	retro_ggor_570,
Myotis lucifugus	ENSMLUG00000015510	1 retrocopy	retro_mluc_408 ,
Macaca mulatta	ENSMMUG00000006494	1 retrocopy	retro_mmul_2435,
Nomascus leucogenys	ENSNLEG00000002831	1 retrocopy	retro_nleu_2030,