RetrogeneDB ID: retro_mluc_399

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429932:871655..872399(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000025107
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000009184
• Aliases: None
• Description: None

Sequence

>retro_mluc_399
ATGGCGGCGGCACTGCTCGTGGTTCTGGGGCTCGTCCTGAGCGTCGAGAGCGGCCCCGGGGCGGGGAGCAGTATCACGAC
TTCCAAACTTATTGTTGACTCCAAAACACGCCTCACCTGCACCTTGGATTCCAGTGACACTGCCATCCTGGGACACCGCT
GGACGAAAGGGGACAAGGTGCTGCAGGAGGACTCGGAGCCCGATCTGGCAACGCAGTACGAGGTAGACACACACGAGAGC
GCAGGACAGTACTTCTGCACCTTCCTCTCGGAACCTACAGGCAGAACCGCCGGCGTGAATGTGGAGGGGCCCCCCAAGAT
TAAGGCTGTGAAGAAGTCAGAGCAAGCCACTGAAGGAGAGACAGTTGTGCTGGCCTGCAAGTCTGAGTCTTTCCCCCCGG
TTACCGACTGGGTGTGGTACAAGATAAATGATGATGGGGTCCAGATTTTCAACAACGCGTCCCAGAACAAGGTAGTGATG
TCCTCGGAGTCCAAGACGGAGTTGCACATCCAGAACCTAGACCTGGAGGCAGACCCTGGCAAGTATGCCTGTAATGGCAC
CAATACAGAGGGCACTGACCAGGCCATCATCACGCTGCGTGTGCGCAACCGCCGCGCTGCCCTCTGGCCCTTCCTGGGTA
TCGTGGCTGAGGTGCTCGTGCTTGTCACCATCATCTTCATCTATGAGCAGCGGCGGAAGCCGGACGAGGTCCTGGATGAT
GAGGACACGGGCTCTGCTCCATAA

Alignment

ORF - retro_mluc_399 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.39 %
• Parental protein coverage: 91.9 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GGNITTSKLIVDSKTRLTCTLDSSDTAILGHRWTKGDKVLQEDSEPDLTTQYEVDTHESAGEYFCTFLPS
          G..ITTSKLIVDSKTRLTCTLDSSDTAILGHRWTKGDKVLQEDSEPDL.TQYEVDTHESAG.YFCTFL.S
Retrocopy GSSITTSKLIVDSKTRLTCTLDSSDTAILGHRWTKGDKVLQEDSEPDLATQYEVDTHESAGQYFCTFL-S

Parental  EPTGRTARVNVEGPPKIKAVKKSEHATEGETVVLACKSESFPPVTDWLWYKINDDGVQIFSNGSQNKVVM
          EPTGRTA.VNVEGPPKIKAVKKSE.ATEGETVVLACKSESFPPVTDW.WYKINDDGVQIF.N.SQNKVVM
Retrocopy EPTGRTAGVNVEGPPKIKAVKKSEQATEGETVVLACKSESFPPVTDWVWYKINDDGVQIFNNASQNKVVM

Parental  SSETKTELHIQNLDLEADPGKYACNGTNAEGTDQAVITLRVRNRLAALWPFLGIVAEVLVLVTIIFIYEK
          SSE.KTELHIQNLDLEADPGKYACNGTN.EGTDQA.ITLRVRNR.AALWPFLGIVAEVLVLVTIIFIYE.
Retrocopy SSESKTELHIQNLDLEADPGKYACNGTNTEGTDQAIITLRVRNRRAALWPFLGIVAEVLVLVTIIFIYEQ

Parental  RRKPDEVLDDEDTGSAP
          RRKPDEVLDDEDTGSAP
Retrocopy RRKPDEVLDDEDTGSAP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_399 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000019717	1 retrocopy	retro_cfam_1426,
Felis catus	ENSFCAG00000007837	1 retrocopy	retro_fcat_822,
Myotis lucifugus	ENSMLUG00000009184	1 retrocopy	retro_mluc_399 ,
Monodelphis domestica	ENSMODG00000006517	2 retrocopies	retro_mdom_1195, retro_mdom_1203,
Mustela putorius furo	ENSMPUG00000009950	1 retrocopy	retro_mputfur_878,