RetrogeneDB ID: retro_mluc_39

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429885:653699..657317(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000027133
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000009948
• Aliases: None
• Description: None

Sequence

>retro_mluc_39
ATGACAAACACTACAGAACATGCCTTGCCCGCCAACTCGACGGCTGAGAGCCGTGAAAAGGAATTTGGCTGCACAGTCAT
GGAGCTCAGGAAGCTCATGGAGCTGCGTTCGACGGATGCTCTGATCCAGATCAATGACCACCATGGAGGTGTAATGAATC
TCTGCAGTAAACTGAGAACCGACCCTGTGGAAGGTCTATCCGGGAGCCCAGCCGATCTGGAAAAACGTAAACAAGTGTTT
GGACAGAACTTAATCCCCGCCAAAAAGGCCAAGACCTTCTTAGAATTAGTGTGGGAAGCCCTTCAAGATGTCACCCTCAT
CATCCTGGAGATCGCAGCCATCATCTCCCTGGTCCTGTCCTTCTATCGTCCCCATGGTGAAGAAAATGAACAGTGTGGTC
TACCTATCAATAGCCCAGAGGACGAAGGGGAGTCAGAAGCTGGCTGGATCGAGGGGGCAGCCATTCTGTTCTCGGTGATC
ATCGTGGTGCTCGTGACGGCCTTCAATGATTGGAGCAAAGAGAAGCAGTTCAGAGGGCTGCAAAATCACATTGAAAAGGA
ACAGAAATTCTCCATTATTCGAAATGGTCACATCATCCAGCTCCCTGTGGCTGATATCGTGGTGGGTGATATTGCCCAAA
TCAAATACGGTGACCTGCTGCCTGCAGATGGGATCCTGATCCAGGGGAATGATCTCAAGATTGACGAGAGCTCTCTGACT
GGGGAATCGGACCATGTCAAGAAATCCTTAGAAAGAGACCCCATGTTGCTCTCAGGGACCCATGTCATGGAAGGTTCTGG
CCGGATGTTAGTGACTGCTGTGGGTGTCAACTCCAAGACTGGAATCATCTTTACCCTCTCGGGGGCCAGTGAGGAAGAAG
ATGAGGAGAAGAAGAAGAAAGGTAAAAAACAAAGAGTCCCCGAAAATTGCAACAAAGCAAAGGCTCCGGATGGGGTAGCC
CTAGAAATCCAGCCACTCAACAGCCAGGAAGGCATCGACAATGAGGGAAAGGAGAAGAAGGTGGTCAAGCTGCCCAAGAA
GAAGTCGGTGCTGCAGGGCAAGCTGACGTGCTTGGCTGTCCAGATCGGGAAAGCTGGTCTAATCATGTCTGCTGTCACCG
TTCTCATCCTGATTCTGTACTTTGTGATTGACAACTTCGTGATACAGCGCAAGCCATGGCTAGCCGAGTGCACCCCCATC
TACATCCAGTACTTTGTCAAGTTCTTCATCATCGGTATCACTGTACTAGTGGTGGCTGTGCCGGAGGGGCTGCCACTGGC
TGTCACCATTTCACTGGCCTACGCTGTGAAGAAAATGATGAAAGACAATAACCTGGTGCGGCACCTGGATGCTTGTGAGA
CCATGGGCAATGCCACTGCCATTTGCTCTGACAAGACAGGCACGTTGACCATGAACCGCATGACTGTGGTACAAGCTTAC
ATCGGAAATACCCATTACCGTCAGATCCCAAGCCCTGATGTCTTGGTGCCTAAGGTCCTGGACCTTCTTGTCAATGGCAT
TTCTATCAACAGTGCCTACACCTCCAAGATCCTGCCTCCGGAGAAGGAGGGGGGCCTGCCACGGCAGGTGGGCAACATGA
CAGAGTGCTCGCTGCTGGGCTTTGTCATCAACCTGAAGCAGGACTACCACGCCGTGCGCAGCGAGGTGCCCGAGGAGAAG
TTCTACAAGGTGTATACCTTCAACTCGGCGCGCAAGTCCATGAGCACGGTCATCCAGAAGCCTGGCGGCGGCTACCGCAT
GTACAGCAAGGGCGCCTCCGAGATCATTCTGCGCAAGTGTAATCGCATCCTGGACAAGAACGGAGAAGCAGTGCCGTTCA
AGAGTAAGGACCAAGATGAGGTAGTGCGCACTGTCATCGAGCCCATGGCCAGTGAGGGACTCCGGACCATCTGCTTAGCT
TATCGAGATTTCAATGATGTAGAGCCCCCGTGGGACCATGAGAGCGAAATCCTCACTGAACTGACCTGCATCGCAGTGGT
GGGCATTGAGGACCCTGTGCGCCCAGAGGTCCCAGACGCTATTGCCAAATGCAGACGAGCTGGCATTACTGTCAGAATGG
TGACAGGGGACAACATCAACACAGCCCGGGCCATTGCCACCAAATGTGGCATCATAGCACCTGGGGACGATTTCCTGTGC
TTGGAAGGGAAAGAGTTCAACCGACTCATCTGCAACGAGAAGGGCGAGGTAGAGCAAGAAAAGCTGGACAAGATCTGGCC
TAAGCTTCGAGTCCTGGCACGATCTTCCCCCACGGACAAGCACACGCTGGTGAAAGGCATCATTGACAGCACGGTTGGGG
AACAGCGACAGGTGGTGGCAGTCACAGGTGATGGCACCAATGACGGGCCGGCTCTGAAGAAAGCGGACGTGGGTTTTGCG
ATGGGTATTGCAGGCACAGATGTGGCAAAGGAGGCATCAGACATCATCATAACAGATGACAACTTTACCAGCATTGTGAA
GGCAGTGATGTGGGGACGAAACGTCTACGACAGTATCTCCAAGTTCTTGCAGTTCCAGCTCACTGTCAATGTGGTGGCCG
TGACTGTGGCCTTCGCTGGAGCCTGCATCACTCAGGACTCCCCGTTGAAAGCTGTGCAGATGCTGTGGGTGAATCTAATC
ATGGACACGTTTGCCTCACTGGCCCTGGCCACAGAGCCCCCCACCGATTCTTTGTTGAAGCGTCGCCCCTATGGCCGAAA
TAAGCCTCTGATCTCACGGACTCTGATGAAGAACATCTTGGGCCACGCGGTCTATCAGCTCACAATCATCTTTTTCCTTG
TCTTTGCCGGTGAGAAATTCTTTGACATTGATAGTGGGAGGAACGCGCCTCTACATTCCCCACCCAGCCAGCACTACACC
ATTGTTTTCAACACTTTTGTGCTGATGCAGCTCTTCAATGAAATCAACTCACGCAAGATCCACGGAGAGAGGAATGTCTT
TGGAGGCATCTTCCGTAATCTCATCTTTTGTGCTGTGGTTCTGGGCACATTCATCAGCCAGATTATCATCGTGGAATTTG
GGGGTAAGCCTTTCAGCTGTACGAAGCTCAGCCTGTCGCAGTGGTTTTGGTGTCTCTTCATTGGCATCGGAGAACTGCTG
TGGGGCCAGGTCATCTCCACAATACCTACCCAATCCCTGAAGTTCCTGAAGGAGGCCGGGCATGGCACTGCCAAAGAGGA
GATCACCAGAGATACAGAGGGACTAGATGAAATTGACCACTCGGAGATGGAGCTACGCCGAGGCCAGATCCTCTGGTTCC
GGGGTCTGAACCGTATCCAGACTCAGATCAGAGTGGTCAAAGCATTCCATAGTTCCCTCCATGAAAGCATCCAGACACCC
AAGAACCAAAACTACATCCACAACTTCATGACCCACCCTGAATTCGCCATAGATGAGGAGGGGCCACGAACACTTCTGGA
TGAGCAAGAGGAGAAAAGTTTTGAAAAGGTTCCTAAGTCTGGGACTAGGGTGCTCCTGTTGGATGGTGAGGTCACTCCAT
CCGCCAACACAAACAACAATGCCGTGGATTGCAGCCAGGTGCAAATTGTTCCCTCCTACCCTGACAGCCCTCTACATAGC
CTGGAGACATCAGTTTGA

Alignment

ORF - retro_mluc_39 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.77 %
• Parental protein coverage: 89.46 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MTNTTEHALPANSTAESREKEFGLTVMELRKLMELRSTDALIQINDHHGGVMNLCSKLKTNPVEGLSGSP
          MTNTTEHALPANSTAESREKEFG.TVMELRKLMELRSTDALIQINDHHGGVMNLCSKL.T.PVEGLSGSP
Retrocopy MTNTTEHALPANSTAESREKEFGCTVMELRKLMELRSTDALIQINDHHGGVMNLCSKLRTDPVEGLSGSP

Parental  ADLEKRKQVFGHNLIPPKKPKTFLELVWEALQDVTLIILEIAAIISLVLSFYRPHGEENEQCGLPINSPE
          ADLEKRKQVFG.NLIP.KK.KTFLELVWEALQDVTLIILEIAAIISLVLSFYRPHGEENEQCGLPINSPE
Retrocopy ADLEKRKQVFGQNLIPAKKAKTFLELVWEALQDVTLIILEIAAIISLVLSFYRPHGEENEQCGLPINSPE

Parental  DEGEAEAGWIEGAAILFSVIIVVLVTAFNDWSKEKQFRGLQNRIEKEQKFSVIRNGHIIQLPVAEIVVGD
          DEGE.EAGWIEGAAILFSVIIVVLVTAFNDWSKEKQFRGLQN.IEKEQKFS.IRNGHIIQLPVA.IVVGD
Retrocopy DEGESEAGWIEGAAILFSVIIVVLVTAFNDWSKEKQFRGLQNHIEKEQKFSIIRNGHIIQLPVADIVVGD

Parental  IAQIKYGDLLPADGILIQGNDLKIDESSLTGESDHVKKSLERDPMLLSGTHVMEGSGRMLVTAVGVNSQT
          IAQIKYGDLLPADGILIQGNDLKIDESSLTGESDHVKKSLERDPMLLSGTHVMEGSGRMLVTAVGVNS.T
Retrocopy IAQIKYGDLLPADGILIQGNDLKIDESSLTGESDHVKKSLERDPMLLSGTHVMEGSGRMLVTAVGVNSKT

Parental  GIIFTLLGASEEEEEEKKKKGKKQGVPENRNKAKAQDGVALEIQPLNSQEGIDSEEKEKKVVKLPKKEKS
          GIIFTL.GASEEE.EEKKKKGKKQ.VPEN.NKAKA.DGVALEIQPLNSQEGID.E.KEKKVVKLPKK.KS
Retrocopy GIIFTLSGASEEEDEEKKKKGKKQRVPENCNKAKAPDGVALEIQPLNSQEGIDNEGKEKKVVKLPKK-KS

Parental  VLQGKLTRLAVQIGKAGLIMSAVTVLILILYFVIDNFVIQRKPWLAECTPIYIQYFVKFFIIGITVLVVA
          VLQGKLT.LAVQIGKAGLIMSAVTVLILILYFVIDNFVIQRKPWLAECTPIYIQYFVKFFIIGITVLVVA
Retrocopy VLQGKLTCLAVQIGKAGLIMSAVTVLILILYFVIDNFVIQRKPWLAECTPIYIQYFVKFFIIGITVLVVA

Parental  VPEGLPLAVTISLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTMNRMTVVQAYIGNTHYRQV
          VPEGLPLAVTISLAY.VKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTMNRMTVVQAYIGNTHYRQ.
Retrocopy VPEGLPLAVTISLAYAVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTMNRMTVVQAYIGNTHYRQI

Parental  PSPDVLAPKALDLLVNGISINSAYTSKILPPEKEGGLPRQVGNKTECSLLGFVIDLKQDYQAVRSEVPEE
          PSPDVL.PK.LDLLVNGISINSAYTSKILPPEKEGGLPRQVGN.TECSLLGFVI.LKQDY.AVRSEVPEE
Retrocopy PSPDVLVPKVLDLLVNGISINSAYTSKILPPEKEGGLPRQVGNMTECSLLGFVINLKQDYHAVRSEVPEE

Parental  KFYKVYTFNSARKSMSTVIQKPGGGYRMYSKGASEIILRKCNRILDKNGEAVPFKSTDRDEVVRTVIEPM
          KFYKVYTFNSARKSMSTVIQKPGGGYRMYSKGASEIILRKCNRILDKNGEAVPFKS.D.DEVVRTVIEPM
Retrocopy KFYKVYTFNSARKSMSTVIQKPGGGYRMYSKGASEIILRKCNRILDKNGEAVPFKSKDQDEVVRTVIEPM

Parental  ASEGLRTICLAYRDFNDVEPPWDHENEILTELTCIAVVGIEDPVRPEVPDAIAKCRRAGITVRMVTGDNV
          ASEGLRTICLAYRDFNDVEPPWDHE.EILTELTCIAVVGIEDPVRPEVPDAIAKCRRAGITVRMVTGDN.
Retrocopy ASEGLRTICLAYRDFNDVEPPWDHESEILTELTCIAVVGIEDPVRPEVPDAIAKCRRAGITVRMVTGDNI

Parental  NTARAIATKCGIISPGDDFLCLEGKEFNRLIRNEKGEVEQEKLDKVWPKLRVLARSSPTDKHTLVKGIID
          NTARAIATKCGII.PGDDFLCLEGKEFNRLI.NEKGEVEQEKLDK.WPKLRVLARSSPTDKHTLVKGIID
Retrocopy NTARAIATKCGIIAPGDDFLCLEGKEFNRLICNEKGEVEQEKLDKIWPKLRVLARSSPTDKHTLVKGIID

Parental  STVGEQRQVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFTSIVKAVMWGRNVYDSI
          STVGEQRQVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDII.TDDNFTSIVKAVMWGRNVYDSI
Retrocopy STVGEQRQVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIIITDDNFTSIVKAVMWGRNVYDSI

Parental  SKFLQFQLTVNVVAVIVAFTGACITQDSPLKAVQMLWVNLIMDTFASLALATEPPTDSLLKRRPYGRNKP
          SKFLQFQLTVNVVAV.VAF.GACITQDSPLKAVQMLWVNLIMDTFASLALATEPPTDSLLKRRPYGRNKP
Retrocopy SKFLQFQLTVNVVAVTVAFAGACITQDSPLKAVQMLWVNLIMDTFASLALATEPPTDSLLKRRPYGRNKP

Parental  LISRTMMKNILGHAVYQLTIIFFLVFAGEKFFDIDSGRNAPLHSPPSQHYTIVFNTFVLMQLFNEINSRK
          LISRT.MKNILGHAVYQLTIIFFLVFAGEKFFDIDSGRNAPLHSPPSQHYTIVFNTFVLMQLFNEINSRK
Retrocopy LISRTLMKNILGHAVYQLTIIFFLVFAGEKFFDIDSGRNAPLHSPPSQHYTIVFNTFVLMQLFNEINSRK

Parental  IHGERNVFGGIFRNLIFCSVVLGTFISQIIIVEFGGKPFSCTKLSLSQWFWCLFIGIGELLWGQVISTIP
          IHGERNVFGGIFRNLIFC.VVLGTFISQIIIVEFGGKPFSCTKLSLSQWFWCLFIGIGELLWGQVISTIP
Retrocopy IHGERNVFGGIFRNLIFCAVVLGTFISQIIIVEFGGKPFSCTKLSLSQWFWCLFIGIGELLWGQVISTIP

Parental  TQSLKFLKEAGHGTAKEEITRDAEGLDEIDHAEMELRRGQILWFRGLNRIQTQIDVINTFQT
          TQSLKFLKEAGHGTAKEEITRD.EGLDEIDH.EMELRRGQILWFRGLNRIQTQI.V...F..
Retrocopy TQSLKFLKEAGHGTAKEEITRDTEGLDEIDHSEMELRRGQILWFRGLNRIQTQIRVVKAFHS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_39 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000009948	1 retrocopy	retro_mluc_39 ,
Oryctolagus cuniculus	ENSOCUG00000006539	1 retrocopy	retro_ocun_861,