RetrogeneDB ID:

retro_mluc_378

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL430148:920371..922819(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMLUG00000029343
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMLUG00000000359
Aliases:None
Description:Ubiquitin carboxyl-terminal hydrolase [Source:UniProtKB/TrEMBL;Acc:G1NT48]


Retrocopy-Parental alignment summary:






>retro_mluc_378
ATGGGAAAGAAACGGATAAAGGGAAAAATTGTTCCAGTTGATGATTCTTCTAAATCTTTAGAACCTGTGTGCAGACACAT
TAGAAAAGGACTGGAACAAAGTATTCTGAAAAAGGCTTTGGTGAATGTGGAATGGAATATTTGCCAAGATTGTGAGACAG
ACAACAAAGTGAAAGACAAATCTGAAGAAGAAACAGAAGAAAACCCTTCCATTTGGCTGTGTCTTAAATGTGGCCATCAG
GGCTGCGGCAGGAACTCGCAGGAGCAGCACGCTCTGAAGCACTCCCAGGTGCCGAGGTCCGAGCCCCACTGTCTGGTGCT
CAGTTTGGACAACTGGAGTGTCTGGTGTTACCTATGTGATGATGAGGTCCAGTATTGTCGTTCAAACCGATTGGGTCAGG
TGGTTGATTATGTTAGGAAACAAGCCCATCCTACAGCTCCAGAATCAGCAAAAGGTAATGGTAGCATTGAACTTGAAAAG
AAAAAATTAGAAAAGGAGAGTAAAAATGAACCAGAGAGAGAGAAAAAGGAAAACATGGCTAAAGAAACTTCCATGAATTA
TACTTCTCAAATAACTGTGAAAGGACTCAGTAATTTGGGGAACACGTGTTTCTTCAATGCAGTTATGCAGAATTTGTCAC
AAACACCAGTGCTAAGAGAACTACTGGAAGAGGTAAAAATGTCTGGAACCGTTGTAAAAATTGAACCACCTGACTTGGCA
CTAACAGAGCCCTTGGAAATTCATCTTGAGCCACCGGGCCCTCTTACTTTGGCCATGAGCCAGTTTCTCAGTGAGATGCA
AGAGACCTCAAAAGGAATTGTGACACCTAAGGAACTCTTCTCCCAGGTCTGTAAGAAAGCAGTGCACTTCGAAGGCTATC
AGCAACAAGACAGCCAGGAGCTGCTCTGGTACTTACTGGATGGGATGAGGGAAGAAGAACACCAAAGAGTGAGTAAAGGA
GTTCTTAAAGCATTTGGTAATTCTACTGAAAAATTGGATGAAGAACTGAAAAGTAAAGTTAAAGATTATGAGAAGAAAGA
ATCAGTGCCGAGTTTTGTGGACCGCATCTTCGGTGGGGAGCTCACGAGCACGATCATGTGTGACGAGTGCAGAACGGTCT
CCTTGGTTCATGAGTCTTTCCTTGACTTGTCTCTACCAGTTTTAGATGATCAGAGTGGTAAGGAAAGTATAAATGATAAA
AATCTGAAAAAGACAATGGAGAACGAAGATAAAGACCGCGAGGAAGAAAAAGATAATTACACTTACATAAAAGAGAGAAA
TGATATTCCATCAGGAATAAGCAAGCACTTGCAGAAAAAAGCAAAGAAGCAAGCCAAAAAGCAGGCCAAGAACCAGCGAA
GGCAACAAAAAATTCAAGGAAAAGTTTTTCATTTCAATGATGTCTGTGCTAACCATCTTGAAGATAATGAGCGTGAGGCT
GAAAAGTCAGTTCAGGGAGAAGTGGATATTAAATCCGACCATATCTCACAAGAGGAAGTTGTAAATGAAGAATATTGTGT
TAATCAGAATGACTTGAATGGCCAAGAGAAAGTGATAGAAAAGGACGTAGATGTGAGAAGTGTCAGCGTGGATAATGACG
TGGAGGTTTTGTCATCTTCTCCCACTGACTGTCCCGGAAGTTTGAACAGTGCCTGCCTGGATGCGGGGGGCGGTGGGGAA
GTGGACATTTCTAGGGGTTTCCAGAACCTGCACTTGGATGCTGCTCTTCACCCTGACGACATACGTCTGGAAATTCTGAA
TGGCAGCCCCGCTCCTGGGACCACGCTGTACGAGTGTATGGGCCAAGATCCAGAAACTGCCTTCTGTACCCTTGCGAACA
GGGACGCGTCCAGTGCTGACAAGTGCTCCATCCAGCACTGCTTATACCAGTTCACCCAGAACGAGAAGCTCCAAGATGCC
AATAAGCTGCTGTGTGAAGTGTGCACCCGGAGACAGTGTAGTGCACCAAAGGCAAACCTAAAAGGTGAAAAGAAACATGT
TTACACCAATGCCAAAAAGCAGGTGTTGATTTCTCTCGCTCCTCCTGTTCTCACCCTTCATTTGAAGCGATTTCAGCAGG
CTGGTTTTAACCTGCACAAAATTAACAAACACATAAAATTTCCGGAGATCTTAGATTTGGCTCCTTTTTGTACTGCTAAA
TGTAAGGATATGGCTGAAGAAAGCACCAGGGTGATGTACTCCCTGTACGGAGTCGTGGAGCACAGCGGTACCTTGATGTC
CGGGCACTACACTGCCTACACCAAGGCGAGAATGGCAAAGAGTCGTCTGTCTGACCTTGTTCTCCGCGGGGATGTCCCCC
AAGATTTTGAAATGGAATCAACCGAAGGGCAGTGGTTTCACATCAGCGACAGCCACGTGCAAGCTGTGCCTACAGCGAAA
GTCCTGAACTCACAGGCGTACCTCCTGTTTTATGAGAGAATTCTCTAA

ORF - retro_mluc_378 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 90. %
Parental protein coverage: 65.38 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMGKKRIKGKIVPVDDSSESLEPVCRHIRKGLERSILKKALVSVEWNICQDCKTDNKVKDTSEEETEENPS
MGKKRIKGKIVPVDDSS.SLEPVCRHIRKGLE.SILKKALV.VEWNICQDC.TDNKVKD.SEEETEENPS
RetrocopyMGKKRIKGKIVPVDDSSKSLEPVCRHIRKGLEQSILKKALVNVEWNICQDCETDNKVKDKSEEETEENPS
ParentalVWLCLKCGHQGCSRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYLCDDEVQYCSSNRLGQVVDYVRK
.WLCLKCGHQGC.RNSQEQHALKH...PRSEPHCLVLSLDNWSVWCYLCDDEVQYC.SNRLGQVVDYVRK
RetrocopyIWLCLKCGHQGCGRNSQEQHALKHSQVPRSEPHCLVLSLDNWSVWCYLCDDEVQYCRSNRLGQVVDYVRK
ParentalQARLTAPESAAKDNGSIELENKKLEKESKNEQEREKKENMAKETSMNYTSQITVKGLSNLGNTCFFNAVM
QA..TAPESA.K.NGSIELE.KKLEKESKNE.EREKKENMAKETSMNYTSQITVKGLSNLGNTCFFNAVM
RetrocopyQAHPTAPESA-KGNGSIELEKKKLEKESKNEPEREKKENMAKETSMNYTSQITVKGLSNLGNTCFFNAVM
ParentalQNLSQTPVLRELLKEVKMSGTIVKIEPPDLALTEPLEIHLEPPGPLTLAMSQFLSEMQETSKGIVTPKEL
QNLSQTPVLRELL.EVKMSGT.VKIEPPDLALTEPLEIHLEPPGPLTLAMSQFLSEMQETSKGIVTPKEL
RetrocopyQNLSQTPVLRELLEEVKMSGTVVKIEPPDLALTEPLEIHLEPPGPLTLAMSQFLSEMQETSKGIVTPKEL
ParentalFSQVCKKAVRFRGYQQQDSQELLRYLLDGMRAEEHQRVSKGILKAFGNSTEKLDEELKNKVKDYEKKKAV
FSQVCKKAV.F.GYQQQDSQELL.YLLDGMR.EEHQRVSKG.LKAFGNSTEKLDEELK.KVKDYEKK..V
RetrocopyFSQVCKKAVHFEGYQQQDSQELLWYLLDGMREEEHQRVSKGVLKAFGNSTEKLDEELKSKVKDYEKKESV
ParentalPSFVDRIFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQSGKKSINDKNLKKTMENEDKDSEEEKDN
PSFVDRIFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQSGK.SINDKNLKKTMENEDKD.EEEKDN
RetrocopyPSFVDRIFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQSGKESINDKNLKKTMENEDKDREEEKDN
ParentalDTYIKERNDIPSGISKHLQKKAKKQAKKQAKNQRRQQKIQGKVLHLNDVCALDHLEDNECETEMSVEGEV
.TYIKERNDIPSGISKHLQKKAKKQAKKQAKNQRRQQKIQGKV.H.NDVCA..HLEDNE.E.E.SV.GEV
RetrocopyYTYIKERNDIPSGISKHLQKKAKKQAKKQAKNQRRQQKIQGKVFHFNDVCA-NHLEDNEREAEKSVQGEV
ParentalDIKSDHISQEEVINKEYCVNQNDLNGQEKMIENVTDNQKFTEDVDVTSVS
DIKSDHISQEEV.N.EYCVNQNDLNGQEK.IE...D......D.DV...S
RetrocopyDIKSDHISQEEVVNEEYCVNQNDLNGQEKVIEKDVDVRSVSVDNDVEVLS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Myotis lucifugus was not studied using ChIP-Seq data.

EST - click to see more details

Myotis lucifugus was not studied using EST data.

TSS - click to see more details

Myotis lucifugus was not studied using FANTOM5 data.

Lab - click to see more details

retro_mluc_378 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Myotis lucifugus ENSMLUG00000000359 1 retrocopy
retro_mluc_378 ,




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