RetrogeneDB ID:

retro_mluc_359

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429865:3624068..3624479(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMLUG00000022308
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL27
Ensembl ID:ENSMLUG00000004119
Aliases:None
Description:60S ribosomal protein L27 [Source:UniProtKB/TrEMBL;Acc:G1P1P7]


Retrocopy-Parental alignment summary:






>retro_mluc_359
ATGGGCAAGTTTATGAAACCCGGGAAGGTGGTGCTGGTCCTGGCCGGACGCTACTCCGGACGCAAAGCCGTCATCGTGAA
GAACATTGATGATGGCACCTCGGACCGCCCCTACAGCCATGCTCTGGTGGCTGGAATTGACTGCTACCCCCGAAAAGTGA
CAGCTGCCATGGGCAAGAAGAAAATTGCCAAGAGGTCAAAGATCAAGTCTTTTGTGAAAGTTTATAACTACAATCACCTC
ATGCCCACAAGGTACTCTGTGGATATCCCCTTGGACAAAACTGTTGTCAACAAGGACGTTTTCAGAGACCCCGCCCTAAA
ACGCAAGGCTCGGCGGGAGGCCAAAGTCAAGTTTGAAGAGAGATACAAGACCGGCAAGAACAAATGGTTCTTCCAGAAGC
TGCGGTTTTAG

ORF - retro_mluc_359 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 99.26 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKS
MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGID.YPRKVTAAMGKKKIAKRSKIKS
RetrocopyMGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDCYPRKVTAAMGKKKIAKRSKIKS
ParentalFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF
FVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF
RetrocopyFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Myotis lucifugus was not studied using RNA-Seq expression data.